SecReT6
I. Summary
SecReT6 ID496 insolico
StrainBurkholderia sp. CCGE1003
Repliconchromosome I [Browse all T6SS(s) in this replicon]
AccessionNC_014539
Location1107096..1116370
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number100000011
ComponentTssGTssJTssKTssM
Number1101
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BC1003_09701102131..1102322 [+], 192307729021CsbD family protein 
2BC1003_09711102478..1102699 [+], 222307729022hypothetical protein 
3BC1003_09721102853..1103557 [+], 705307729023glutathione S-transferase domain-containing protein 
4BC1003_09731103764..1104510 [+], 747307729024hypothetical protein 
5BC1003_09741104605..1105798 [-], 1194307729025acyltransferase 3 
6BC1003_09761107096..1107527 [-], 432307729026type VI secretion system lysozyme-like protein  TssE
7BC1003_09771107541..1108299 [-], 759307729027Clp domain-containing protein  TssH
8BC1003_09801109015..1112548 [+], 3534307729028ImcF domain-containing protein  TssM
9BC1003_09821112908..1114722 [+], 1815307729029type VI secretion protein  TssF
10BC1003_09831114719..1115840 [+], 1122307729030type VI secretion protein  TssG
11BC1003_09841115840..1116370 [+], 531307729031type VI secretion lipoprotein  TssJ
12BC1003_09851117051..1117473 [-], 423307729032hypothetical protein 
13BC1003_09861117894..1118073 [-], 180307729033rubredoxin-type Fe(Cys)4 protein 
14BC1003_09871118308..1118709 [+], 402307729034hypothetical protein 
15BC1003_09881118914..1120884 [+], 1971307729035ABC transporter-like protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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