SecReT6
I. Summary
SecReT6 ID497 insolico
StrainBurkholderia sp. CCGE1003
Repliconchromosome I [Browse all T6SS(s) in this replicon]
AccessionNC_014539
Location3618414..3632473
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number000100001
ComponentTssGTssJTssKTssM
Number1001
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BC1003_30973613850..3614161 [+], 312307731113hypothetical protein 
2BC1003_30983614318..3616066 [+], 1749307731114ABC transporter-like protein 
3BC1003_30993616056..3616220 [-], 165307731115hypothetical protein 
4BC1003_31003616432..3617556 [+], 1125307731116hypothetical protein 
5BC1003_31023618414..3619514 [-], 1101307731117type VI secretion protein  TssG
6BC1003_31033619511..3621418 [-], 1908307731118type VI secretion protein  TssF
7BC1003_31043621593..3621844 [-], 252307731119hypothetical protein 
8BC1003_31053621828..3622514 [-], 687307731120hypothetical protein 
9BC1003_31063622520..3622807 [-], 288307731121hypothetical protein  PAAR
10BC1003_31073622840..3626316 [-], 3477307731122ImcF domain-containing protein  TssM
11BC1003_31083626335..3627468 [-], 1134307731123hypothetical protein 
12BC1003_31093627470..3627745 [-], 276307731124hypothetical protein  PAAR
13BC1003_31103627788..3628630 [-], 843307731125hypothetical protein 
14BC1003_31113628725..3629942 [-], 1218307731126hypothetical protein 
15BC1003_31123629942..3632473 [-], 2532307731127Rhs element Vgr protein  TssI
16BC1003_31133633040..3633210 [-], 171307731128hypothetical protein 
17BC1003_31143633292..3633768 [-], 477307731129hypothetical protein 
18BC1003_31163635439..3635696 [-], 258307731130ECF subfamily RNA polymerase sigma-24 factor 
19BC1003_31173636523..3636876 [-], 354307731131hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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