SecReT6
I. Summary
SecReT6 ID498 insolico
StrainBurkholderia sp. CCGE1003
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_014540
Location744668..772936
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BC1003_4177740079..740396 [-], 318307726191hypothetical protein 
2BC1003_4178740570..741430 [-], 861307726192putative transmembrane anti-sigma factor 
3BC1003_4179741563..742585 [-], 1023307726193Catalase related subgroup 
4BC1003_4180742751..743722 [-], 972307726194putative transmembrane anti-sigma factor 
5BC1003_4181743719..744267 [-], 549307726195RNA polymerase, sigma-24 subunit, ECF subfamily 
6BC1003_4182744668..745750 [+], 1083307726196type VI secretion-associated protein, ImpA family  TssA
7BC1003_4183745798..746121 [-], 324307726197hypothetical protein 
8BC1003_4184746217..749114 [-], 2898307726198serine/threonine protein kinase 
9BC1003_4185749124..749840 [-], 717307726199protein serine/threonine phosphatase 
10BC1003_4186749837..751519 [-], 1683307726200type VI secretion-associated protein, BMA_A0400 family 
11BC1003_4187751516..755079 [-], 3564307726201type VI secretion protein IcmF  TssM
12BC1003_4188755084..756421 [-], 1338307726202type IV / VI secretion system protein, DotU family  TssL
13BC1003_4189756418..757758 [-], 1341307726203type VI secretion protein, VC_A0114 family  TssK
14BC1003_4190757830..759518 [-], 1689307726204FHA domain containing protein  Fha
15BC1003_4191759515..760063 [-], 549307726205putative secreted protein 
16BC1003_4192760060..761949 [-], 1890307726206type VI secretion system Vgr family protein  TssI
17BC1003_4193762032..762712 [-], 681307726207hypothetical protein 
18BC1003_4194762888..763898 [-], 1011307726208glycosyltransferase sugar-binding region containing DXD motif protein 
19BC1003_4195763938..766748 [-], 2811307726209type VI secretion ATPase, ClpV1 family  TssH
20BC1003_4196766839..767864 [-], 1026307726210type VI secretion protein, VC_A0111 family  TssG
21BC1003_4197767828..769735 [-], 1908307726211type VI secretion protein, VC_A0110 family  TssF
22BC1003_4198769741..770244 [-], 504307726212type VI secretion system lysozyme-related protein  TssE
23BC1003_4199770299..770802 [-], 504307726213hypothetical protein  TssD
24BC1003_4200770913..772406 [-], 1494307726214type VI secretion protein, EvpB/VC_A0108 family  TssC
25BC1003_4201772415..772936 [-], 522307726215type VI secretion protein, VC_A0107 family  TssB
26BC1003_4202773318..774358 [+], 1041307726216hypothetical protein 
27BC1003_4203774355..775275 [+], 921307726217histidine kinase HAMP region domain-containing protein 
28BC1003_4204775272..776762 [+], 1491307726218serine/threonine protein kinase 
29BC1003_4205776856..777776 [-], 9213077262192-dehydropantoate 2-reductase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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