SecReT6
I. Summary
SecReT6 ID50 insolico
StrainPhotorhabdus luminescens subsp. laumondii TTO1
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_005126
Location372357..415137
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1plu0346368554..369261 [-], 70837524359hypothetical protein 
2plu0347369568..369795 [-], 22837524360hypothetical protein 
3plu0348370266..370646 [-], 38137524361hypothetical protein 
4plu0349370668..370817 [-], 15037524362hypothetical protein 
5plu0350370937..371134 [+], 19837524363hypothetical protein 
6plu0351371238..371789 [-], 55237524364hypothetical protein 
7plu0352372357..372677 [-], 32137524365hypothetical protein 
8plu0353372677..377092 [-], 441637524366hypothetical protein  PAAR
9plu0354377114..377533 [-], 42037524367hypothetical protein 
10plu0355377581..379476 [-], 189637524368hypothetical protein  TssI
11plu0357 (ISPlu9J)380265..381647 [+], 138337524369IS4 family transposase 
12plu0359 (pmt1)382431..385976 [-], 354637524370hypothetical protein  TssM
13plu0360385973..387406 [-], 143437524371hypothetical protein  TssA
14plu0361387412..388059 [-], 64837524372hypothetical protein 
15plu0362388056..388856 [-], 80137524373hypothetical protein 
16plu0363388853..391498 [-], 264637524374hypothetical protein  TssH
17plu0364391509..392279 [-], 77137524375hypothetical protein  TssL
18plu0365392279..393631 [-], 135337524376hypothetical protein  TssK
19plu0366393634..394200 [-], 56737524377hypothetical protein  TssJ
20plu0367394200..395486 [-], 128737524378hypothetical protein  Fha
21plu0368395492..396472 [-], 98137524379hypothetical protein  TssG
22plu0369396508..398355 [-], 184837524380hypothetical protein  TssF
23plu0370398357..398797 [-], 44137524381hypothetical protein  TssE
24plu0371398804..400282 [-], 147937524382hypothetical protein  TssC
25plu0372400306..400803 [-], 49837524383hypothetical protein  TssB
26plu0373401704..402222 [+], 51937524384hypothetical protein  TssD
27plu0374402861..403703 [+], 84337524385hypothetical protein 
28plu0375 (gor)403799..405169 [+], 137137524386glutathione reductase 
29plu0376405435..406523 [+], 108937524387hypothetical protein 
30plu0377406520..408172 [+], 165337524388hypothetical protein 
31plu0378 (mobB)408253..408771 [-], 51937524389molybdopterin-guanine dinucleotide biosynthesis protein B 
32plu0379 (mobA)408768..409367 [-], 60037524390molybdopterin-guanine dinucleotide biosynthesis protein MobA 
33plu0380409576..410568 [+], 99337524391serine/threonine protein kinase 
34plu0381 (dsbA)410589..411212 [+], 62437524392periplasmic protein disulfide isomerase I 
35plu0382411368..412444 [-], 107737524393hypothetical protein 
36plu0383412510..415137 [-], 262837524394hypothetical protein 
37plu0384415165..415404 [-], 24037524395hypothetical protein 
38plu0385 (ISPlu10K)415530..416543 [+], 101437524396IS630 family transposase 
39plu0386 (polA)417018..419807 [+], 279037524397DNA polymerase I 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ECA2866

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1plu0373401704..402222 [+], 51937524384hypothetical protein ECA2866

Download FASTA format files
Proteins        Genes
N/A
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
 
in_silico This literature contains bioinformatics investigation