SecReT6
I. Summary
SecReT6 ID500 insolico
StrainStigmatella aurantiaca DW4/3-1
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_014623
Location2237225..2255762
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number001001211
ComponentTssGTssJTssKTssM
Number0011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1STAUR_18012233115..2234794 [+], 1680310819074AMP-dependent synthetase and ligase domain-containing protein 
2STAUR_18022234835..2235221 [+], 387310819075hypothetical protein 
3STAUR_18032235214..2236224 [+], 1011310819076hypothetical protein 
4STAUR_18042236229..2237107 [+], 879310819077hypothetical protein 
5STAUR_18052237225..2237845 [+], 621310819078intracellular growth locus subunit a  TssB
6STAUR_18062237887..2239380 [+], 1494310819079hypothetical protein  TssC
7STAUR_18072239429..2240004 [+], 576310819080hypothetical protein 
8STAUR_18082240030..2241283 [+], 1254310819081hypothetical protein  TssK
9STAUR_18092241287..2241679 [+], 393310819082gpw/gp25 family protein  TssE
10STAUR_18102241679..2243328 [+], 1650310819083hypothetical protein 
11STAUR_18112243371..2243973 [+], 603310819084hypothetical protein 
12STAUR_1812 (impG)2243980..2245629 [+], 1650310819085hypothetical protein  TssF
13STAUR_18132245626..2246264 [+], 639310819086hypothetical protein  TssL
14STAUR_18142246261..2246572 [+], 312310819087hypothetical protein 
15STAUR_18152246576..2250430 [+], 3855310819088hypothetical protein  TssM
16STAUR_18162250439..2250909 [+], 471310819089hypothetical protein 
17STAUR_18172250927..2252300 [-], 1374310819090hypothetical protein 
18STAUR_18182252329..2254251 [-], 1923310819091hypothetical protein 
19STAUR_18192254311..2255762 [-], 1452310819092hypothetical protein  TssC
20STAUR_18202255788..2255916 [-], 129310819093hypothetical protein 
21STAUR_18212255920..2257236 [+], 1317310819094hypothetical protein 
22STAUR_18222257298..2257579 [-], 282310819095hypothetical protein 
23STAUR_18232257768..2258913 [+], 1146310819096hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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