SecReT6
I. Summary
SecReT6 ID505 insolico
StrainGeobacter sp. M18
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_014973
Location3587914..3603063
Comment
FunctionN/A
T6SS TypeType i; subtype i4a
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number011111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1GM18_30213585077..3585523 [-], 447322420517hypothetical protein 
2GM18_30223585777..3586433 [-], 657322420518phosphoesterase PA-phosphatase-like protein 
3GM18_30233586522..3586812 [-], 291322420519hypothetical protein 
4GM18_30243586858..3587604 [-], 747322420520hypothetical protein 
5GM18_30253587914..3589803 [-], 1890322420521ImpA family type VI secretion-associated protein  TssI
6GM18_30263589813..3590841 [-], 1029322420522type VI secretion protein  TssG
7GM18_30273590838..3592634 [-], 1797322420523type VI secretion protein  TssF
8GM18_30283592639..3593109 [-], 471322420524type VI secretion system lysozyme-like protein  TssE
9GM18_30293593125..3593622 [-], 498322420525type VI secretion system effector  TssD
10GM18_30303593658..3595142 [-], 1485322420526EvpB family type VI secretion protein  TssC
11GM18_30313595157..3595678 [-], 522322420527type VI secretion protein  TssB
12GM18_30323595702..3597033 [-], 1332322420528type VI secretion-associated protein, ImpA family  TssA
13GM18_30333597030..3600479 [-], 3450322420529hypothetical protein  TssM
14GM18_30343600495..3601160 [-], 666322420530DotU family type IV / VI secretion system protein  TssL
15GM18_30353601163..3602560 [-], 1398322420531type VI secretion protein  TssK
16GM18_30363602560..3603063 [-], 504322420532type VI secretion lipoprotein  TssJ
17GM18_30373603265..3603441 [+], 177322420533twin-arginine translocation protein, TatA/E family subunit 
18GM18_30383603505..3604008 [+], 504322420534molybdopterin-guanine dinucleotide biosynthesis protein B 
19GM18_30393604188..3604466 [-], 279322420535hypothetical protein 
20GM18_30403604756..3605409 [+], 654322420536hypothetical protein 
21GM18_30413605544..3605816 [-], 273322420537hypothetical protein 
22GM18_30423606098..3606727 [+], 630322420538hypothetical protein 
23GM18_30433606769..3607203 [+], 435322420539thioesterase superfamily protein 
24GM18_30443607200..3607409 [+], 210322420540hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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