SecReT6
I. Summary
SecReT6 ID506 insolico
StrainGranulicella tundricola MP5ACTX9
Repliconplasmid pACIX901 [Browse all T6SS(s) in this replicon]
AccessionNC_015057
Location8653..34129
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1021
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1AciX9_39958084..8623 [-], 540322432860hypothetical protein 
2AciX9_39968653..10689 [-], 2037322432861ImpA family type VI secretion-associated protein  TssI
3AciX9_399710797..13457 [-], 2661322432862type VI secretion ATPase, ClpV1 family  TssH
4AciX9_399813497..14549 [-], 1053322432863type VI secretion protein  TssG
5AciX9_399914513..16360 [-], 1848322432864type VI secretion protein  TssF
6AciX9_400016364..16825 [-], 462322432865type VI secretion system lysozyme-like protein  TssE
7AciX9_400116855..18714 [-], 1860322432866type VI secretion-associated protein, ImpA family  TssA
8AciX9_400218701..19432 [-], 732322432867virulence protein SciE type  TagJ
9AciX9_400319440..19916 [-], 477322432868hypothetical protein  TssD
10AciX9_400419998..21491 [-], 1494322432869type VI secretion protein EvpB  TssC
11AciX9_400521484..22005 [-], 522322432870type VI secretion protein  TssB
12AciX9_400622432..23787 [+], 1356322432871type VI secretion protein  TssK
13AciX9_400723891..25909 [+], 2019322432872amidohydrolase 
14AciX9_400825967..28417 [-], 2451322432873hypothetical protein 
15AciX9_400928657..30015 [+], 1359322432874type VI secretion protein  TssK
16AciX9_401030012..30746 [+], 735322432875DotU family type IV/VI secretion system protein  TssL
17AciX9_401130743..34129 [+], 3387322432876ImcF domain-containing protein  TssM
18AciX9_401234208..34984 [+], 777322432877protein serine/threonine phosphatase 
19AciX9_401335290..36555 [+], 1266322432878peptidase M24 
20AciX9_401436653..37351 [+], 699322432879GntR family transcriptional regulator 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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