SecReT6
I. Summary
SecReT6 ID507 insolico
StrainBurkholderia sp. CCGE1001
Repliconchromosome I [Browse all T6SS(s) in this replicon]
AccessionNC_015136
Location191742..211407
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111011111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BC1001_0168186891..187949 [-], 1059323524540biotin synthase 
2BC1001_0169187985..188722 [-], 738323524541dethiobiotin synthase 
3BC1001_0170188719..189903 [-], 11853235245428-amino-7-oxononanoate synthase 
4BC1001_0171189903..191258 [-], 1356323524543adenosylmethionine-8-amino-7-oxononanoate aminotransferase 
5BC1001_0172191742..192833 [-], 1092323524544ImpA domain-containing protein  TssA
6BC1001_0173192830..193921 [-], 1092323524545type VI secretion protein  TssG
7BC1001_0174193921..195810 [-], 1890323524546type VI secretion protein  TssF
8BC1001_0175195839..196411 [-], 573323524547type VI secretion system lysozyme-like protein  TssE
9BC1001_0176196398..197279 [-], 882323524548virulence protein SciE type  TagJ
10BC1001_0177197276..197977 [-], 702323524549hypothetical protein 
11BC1001_0178198420..201167 [+], 2748323524550type VI secretion ATPase, ClpV1 family  TssH
12BC1001_0179201229..201768 [+], 540323524551type VI secretion protein  TssB
13BC1001_0180201809..203302 [+], 1494323524552EvpB type VI secretion protein  TssC
14BC1001_0181203400..203885 [+], 486323524553type VI secretion system effector, Hcp1 family  TssD
15BC1001_0182203985..204488 [+], 504323524554type VI secretion lipoprotein  TssJ
16BC1001_0183204510..205856 [+], 1347323524555type VI secretion protein  TssK
17BC1001_0184205938..207266 [+], 1329323524556type IV / VI secretion system protein, DotU family  TssL
18BC1001_0185207295..211407 [+], 4113323524557type VI secretion protein IcmF  TssM
19BC1001_0186211503..212081 [-], 579323524558hypothetical protein 
20BC1001_0187212192..213499 [-], 1308323524559hypothetical protein 
21BC1001_0188214290..214739 [-], 450323524560hypothetical protein 
22BC1001_0189214771..215901 [-], 1131323524561acyl-CoA dehydrogenase domain-containing protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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