SecReT6
I. Summary
SecReT6 ID508 insolico
StrainBurkholderia sp. CCGE1001
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_015137
Location2285703..2305641
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111011111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BC1001_56292281728..2282360 [+], 633323529911hypothetical protein 
2BC1001_56302282526..2282789 [+], 264323529912hypothetical protein 
3BC1001_56312282909..2283841 [+], 933323529913ornithine cyclodeaminase/mu-crystallin 
4BC1001_56322284133..2285614 [+], 1482323529914glucose-6-phosphate 1-dehydrogenase 
5BC1001_56332285703..2286482 [-], 780323529915type IV / VI secretion system protein, DotU family  TssL
6BC1001_56342286479..2287825 [-], 1347323529916type VI secretion protein  TssK
7BC1001_56352287934..2288560 [-], 627323529917type VI secretion lipoprotein  TssJ
8BC1001_56362288944..2289630 [+], 687323529918tetratricopeptide repeat-containing protein 
9BC1001_56372289666..2290193 [+], 528323529919type VI secretion protein  TssB
10BC1001_56382290208..2291698 [+], 1491323529920EvpB type VI secretion protein  TssC
11BC1001_56392291772..2292275 [+], 504323529921type VI secretion system effector, Hcp1 family  TssD
12BC1001_56402292359..2292838 [+], 480323529922type VI secretion system lysozyme-like protein  TssE
13BC1001_56412292949..2294787 [+], 1839323529923type VI secretion protein  TssF
14BC1001_56422294751..2295845 [+], 1095323529924type VI secretion protein  TssG
15BC1001_56432295879..2298554 [+], 2676323529925type VI secretion ATPase, ClpV1 family  TssH
16BC1001_56442298590..2299708 [+], 1119323529926type VI secretion-associated protein, ImpA family  TssA
17BC1001_56452299807..2300772 [-], 966323529927OmpA/MotB domain-containing protein  TagL
18BC1001_56462300777..2301769 [-], 993323529928type VI secretion-associated protein 
19BC1001_56472301766..2305641 [-], 3876323529929type VI secretion protein IcmF  TssM
20BC1001_56482305915..2306760 [-], 846323529930peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin 
21BC1001_56492306886..2307863 [+], 978323529931hypothetical protein 
22BC1001_56502308017..2309153 [+], 1137323529932Inosine/uridine-preferring nucleoside hydrolase 
23BC1001_56512309191..2310147 [-], 957323529933LysR family transcriptional regulator 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
BCAL0343

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1BC1001_56392291772..2292275 [+], 504323529921type VI secretion system effector, Hcp1 family BCAL0343

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Proteins        Genes
N/A
N/A