SecReT6
I. Summary
SecReT6 ID509 insolico
StrainAcidovorax avenae subsp. avenae ATCC 19860
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_015138
Location1673795..1698996
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111011111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Acav_15011670486..1671712 [-], 1227326316318RND family efflux transporter MFP subunit 
2Acav_15021671875..1672765 [+], 891326316319squalene synthase HpnC 
3Acav_15031672809..1673465 [-], 657326316320hypothetical protein 
4Acav_15041673795..1674277 [-], 483326316321hypothetical protein  TssD
5Acav_15051674854..1676827 [+], 1974326316322serine/threonine protein kinase 
6Acav_15061676933..1677439 [+], 507326316323hypothetical protein 
7Acav_15071677461..1679818 [+], 2358326316324FHA domain-containing protein  Fha
8Acav_15081679815..1680603 [+], 789326316325protein serine/threonine phosphatase 
9Acav_15091680647..1681228 [+], 582326316326type VI secretion lipoprotein  TssJ
10Acav_15101681276..1682610 [+], 1335326316327type VI secretion protein  TssK
11Acav_15111682625..1683977 [+], 1353326316328DotU family type IV / VI secretion system protein  TssL
12Acav_15121683981..1687613 [+], 3633326316329type VI secretion protein IcmF  TssM
13Acav_15131687613..1688308 [+], 696326316330type VI secretion system-associated protein 
14Acav_15141688354..1689403 [+], 1050326316331type VI secretion-associated protein, ImpA family  TssA
15Acav_15151689564..1690112 [+], 549326316332type VI secretion protein  TssB
16Acav_15161690126..1691625 [+], 1500326316333type VI secretion protein EvpB  TssC
17Acav_15171691750..1692538 [+], 789326316334virulence protein SciE type  TagJ
18Acav_15181692555..1693076 [+], 522326316335type VI secretion system lysozyme-like protein  TssE
19Acav_15191693150..1695024 [+], 1875326316336type VI secretion protein  TssF
20Acav_15201695021..1696187 [+], 1167326316337type VI secretion protein  TssG
21Acav_15211696258..1698996 [+], 2739326316338type VI secretion ATPase, ClpV1 family  TssH
22Acav_15231700138..1700641 [+], 504326316339hypothetical protein 
23Acav_15241700652..1702904 [-], 2253326316340xanthine dehydrogenase 
24Acav_15251702910..1703860 [-], 951326316341xanthine dehydrogenase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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