SecReT6
I. Summary
SecReT6 ID510 insolico
StrainPlanctomyces brasiliensis DSM 5305
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_015174
Location2053609..2081120
Comment
FunctionN/A
T6SS TypeType i; subtype i5
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number131111211
ComponentTssGTssJTssKTssM
Number1011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Plabr_17302048609..2049991 [+], 1383325108295hypothetical protein 
2Plabr_17312050279..2051060 [-], 782325108296transposase 
3Plabr_17322051649..2052491 [-], 843325108297lipase 
4Plabr_17332052604..2053482 [-], 879325108298forkhead-associated protein  Fha
5Plabr_17342053609..2054814 [+], 1206325108299type VI secretion-associated protein, ImpA family  TssA
6Plabr_17352055032..2055550 [+], 519325108300type VI secretion protein  TssB
7Plabr_17362055552..2057051 [+], 1500325108301type VI secretion protein EvpB  TssC
8Plabr_17372057243..2058856 [+], 1614325108302type VI secretion protein EvpB  TssC
9Plabr_17382058888..2059688 [+], 801325108303virulence protein SciE type  TagJ
10Plabr_17392059764..2060237 [+], 474325108304type VI secretion system lysozyme-like protein  TssE
11Plabr_17402060242..2062083 [+], 1842325108305type VI secretion protein  TssF
12Plabr_17412062080..2063180 [+], 1101325108306type VI secretion protein  TssG
13Plabr_17422063220..2065874 [+], 2655325108307type VI secretion ATPase, ClpV1 family  TssH
14Plabr_17432065931..2066428 [+], 498325108308type VI secretion system effector  TssD
15Plabr_17452067042..2067707 [-], 666325108309hypothetical protein 
16Plabr_17462067772..2068371 [-], 600325108310hypothetical protein 
17Plabr_17472068444..2069490 [-], 1047325108311hypothetical protein 
18Plabr_17482069562..2070137 [-], 576325108312hypothetical protein  TssD
19Plabr_17492070229..2070753 [-], 525325108313type VI secretion system effector  TssD
20Plabr_17502071041..2073005 [+], 1965325108314ImpA family type VI secretion-associated protein  TssI
21Plabr_17512073092..2073382 [+], 291325108315hypothetical protein  PAAR
22Plabr_17522073401..2074999 [-], 1599325108316methyltransferase regulatory domain-containing protein 
23Plabr_17532075202..2076956 [-], 1755325108317hypothetical protein 
24Plabr_17542077357..2078793 [+], 1437325108318type VI secretion protein  TssK
25Plabr_17552078790..2079431 [+], 642325108319type IV / VI secretion system, DotU  TssL
26Plabr_17562079489..2081120 [+], 1632325108320hypothetical protein  TssM
27Plabr_17572081436..2083616 [-], 2181325108321hypothetical protein 
28Plabr_17582083845..2084045 [-], 201325108322CsbD family protein 
29Plabr_17592084486..2085379 [+], 8943251083233-oxoacyl-(acyl-carrier-protein) reductase 
30Plabr_17602085592..2085777 [+], 186325108324pH adaptation potassium efflux system protein B 2; sodium/hydrogen antiporter subunit 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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