SecReT6
I. Summary
SecReT6 ID514 insolico
StrainEnterobacter cloacae EcWSU1
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_016514
Location2755324..2792770
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111211111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1EcWSU1_026672752610..2753155 [-], 546365970959hypothetical protein 
2EcWSU1_026682753127..2754203 [-], 1077365970960hypothetical protein 
3EcWSU1_026692754207..2754773 [-], 567365970961hypothetical protein 
4EcWSU1_026702755324..2757246 [-], 1923365970962hypothetical protein  TssI
5EcWSU1_026712757801..2757914 [+], 114365970963hypothetical protein 
6EcWSU1_02672 (draG)2759000..2760100 [-], 1101365970964ADP-ribosyl-[dinitrogen reductase] glycohydrolase 
7EcWSU1_026732760100..2761440 [-], 1341365970965hypothetical protein  PAAR
8EcWSU1_026742761443..2762237 [-], 795365970966hypothetical protein 
9EcWSU1_026752762249..2764177 [-], 1929365970967hypothetical protein  TssI
10EcWSU1_026762764721..2765482 [-], 762365970968ankyrin 
11EcWSU1_026772765479..2766897 [-], 1419365970969hypothetical protein 
12EcWSU1_02678 (spk1)2766934..2768370 [-], 1437365970970serine/threonine-protein kinase PK-1 
13EcWSU1_02679 (clpV1)2768395..2771076 [-], 2682365970971protein ClpV1  TssH
14EcWSU1_026802771045..2772088 [-], 1044365970972hypothetical protein  TssG
15EcWSU1_026812772085..2773962 [-], 1878365970973hypothetical protein  TssF
16EcWSU1_026832773959..2774540 [-], 582365970975hypothetical protein  TssE
17EcWSU1_026842774515..2775333 [-], 819365970976Virulence protein SciE Type  TagJ
18EcWSU1_026822774521..2775507 [+], 987365970974hypothetical protein 
19EcWSU1_026852775337..2776323 [-], 987365970977hypothetical protein 
20EcWSU1_02686 (prpC)2776340..2777137 [-], 798365970978protein phosphatase prpC 
21EcWSU1_026872777134..2778918 [-], 1785365970979FHA Domain-Containing protein  Fha
22EcWSU1_026882779325..2779678 [-], 354365970980hypothetical protein  ECL_01543 (i)
23EcWSU1_02689 (hcp1)2780226..2780834 [-], 609365970981hypothetical protein  TssD
24EcWSU1_026902782152..2783651 [-], 1500365970982hypothetical protein  TssC
25EcWSU1_026912783655..2784194 [-], 540365970983hypothetical protein  TssB
26EcWSU1_026922784255..2785271 [-], 1017365970984hypothetical protein  TssA
27EcWSU1_026932785283..2786071 [-], 789365970985hypothetical protein 
28EcWSU1_026942786016..2789636 [-], 3621365970986hypothetical protein  TssM
29EcWSU1_02695 (ytxE)2789639..2790877 [-], 1239365970987protein YtxE  TssL
30EcWSU1_026962790895..2792292 [-], 1398365970988hypothetical protein  TssK
31EcWSU1_02697 (vasD)2792267..2792770 [-], 504365970989type VI secretion system protein VasD  TssJ
32EcWSU1_026982792794..2793288 [-], 495365970990hypothetical protein 
33EcWSU1_026992793693..2793794 [-], 102365970991hypothetical protein 
34EcWSU1_02700 (ydeP)2794291..2796579 [+], 2289365970992hypothetical protein 
35EcWSU1_02701 (oxyR)2796603..2797505 [+], 903365970993hydrogen peroxide-inducible genes activator 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ECL_01567 , SMA2263

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1EcWSU1_02666(rhsB)2748218..2752606 [-], 4389365970958RhsB ECL_01567
2EcWSU1_02689(hcp1)2780226..2780834 [-], 609365970981hypothetical protein SMA2263

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Proteins        Genes

Homology Immunity protein list
ECL_01568, ECL_01543

Immunity protein identified
#Locus tag(Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1EcWSU1_026652747221..2747826 [-], 606365970957hypothetical protein ECL_01568
2EcWSU1_026882779325..2779678 [-], 354365970980hypothetical protein ECL_01543

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Proteins        Genes
N/A