SecReT6
I. Summary
SecReT6 ID515 insolico
StrainBurkholderia sp. YI23
Repliconchromosome III [Browse all T6SS(s) in this replicon]
AccessionNC_016590
Location5369..34538
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number001110111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BYI23_C0000105369..5773 [-], 405377807393GPW/gp25 family protein  TssE
2BYI23_C000020 (istB)5858..6625 [-], 768377807394IstB ATP binding domain-containing protein 
3BYI23_C0000306638..7525 [-], 888377807395putative transposase for insertion sequence 
4BYI23_C0000407675..8937 [+], 1263377807396putative integrase/recombinase 
5BYI23_C0000508934..9926 [+], 993377807397phage integrase 
6BYI23_C00006010940..11662 [-], 723377807398putative transposase for insertion sequence 
7BYI23_C00007011708..11833 [-], 126377807399hypothetical protein 
8BYI23_C00008011908..12570 [-], 663377807400hypothetical protein  TssL
9BYI23_C00009012567..13913 [-], 1347377807401hypothetical protein  TssK
10BYI23_C00010013981..15432 [-], 1452377807402hypothetical protein  TssC
11BYI23_C00011015712..18060 [+], 2349377807403Rhs element Vgr protein  TssI
12BYI23_C00012018988..21654 [+], 2667377807404hypothetical protein 
13BYI23_C00013022278..22718 [+], 441377807405hypothetical protein 
14BYI23_C00014023061..24287 [+], 1227377807406hypothetical protein 
15BYI23_C000150 (imcF)24315..27806 [+], 3492377807407ImcF domain-containing protein  TssM
16BYI23_C00016027845..28711 [+], 867377807408hypothetical protein 
17BYI23_C000170 (impA)28754..30340 [+], 1587377807409protein ImpA  TssA
18BYI23_C00018030359..32182 [+], 1824377807410hypothetical protein  TssF
19BYI23_C00019032224..33210 [+], 987377807411hypothetical protein  TssG
20BYI23_C00020033214..33978 [+], 765377807412hypothetical protein  TssJ
21BYI23_C000210 (ompA/motB)34023..34538 [+], 516377807413OmpA/MotB family outer membrane protein  TagL
22BYI23_C00022034758..35600 [+], 843377807414class II aldolase/adducin family protein 
23BYI23_C00023035709..37025 [+], 1317377807415major facilitator superfamily protein 
24BYI23_C00024037192..38739 [+], 1548377807416Rieske (2Fe-2S) domain-containing protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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