SecReT6
I. Summary
SecReT6 ID516 insolico
StrainBurkholderia sp. YI23
Repliconchromosome III [Browse all T6SS(s) in this replicon]
AccessionNC_016590
Location206730..233278
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number121111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BYI23_C001810202085..202933 [-], 849377807573oxidoreductase FAD-binding subunit 
2BYI23_C001820202989..204242 [-], 1254377807574major facilitator superfamily protein 
3BYI23_C001830204625..205533 [+], 909377807575XRE family transcriptional regulator 
4BYI23_C001840206097..206603 [+], 507377807576cache type 2 domain-containing protein 
5BYI23_C001850206730..207218 [-], 489377807577hcp protein  TssD
6BYI23_C001860207336..207680 [-], 345377807578putative anti-sigma factor antagonist 
7BYI23_C001870208111..208605 [+], 495377807579hypothetical protein  TssB
8BYI23_C001880208607..210094 [+], 1488377807580hypothetical protein  TssC
9BYI23_C001890210293..210781 [+], 489377807581hcp protein  TssD
10BYI23_C001900210877..211218 [+], 342377807582hypothetical protein  TssE
11BYI23_C001910211245..212969 [+], 1725377807583hypothetical protein  TssF
12BYI23_C001920212933..213916 [+], 984377807584hypothetical protein  TssG
13BYI23_C001930213960..216602 [+], 2643377807585type VI secretion ATPase, ClpV1 family  TssH
14BYI23_C001940216685..219315 [+], 2631377807586Rhs element Vgr protein  TssI
15BYI23_C001950219320..221992 [+], 2673377807587pentapeptide repeat-containing protein 
16BYI23_C001960221989..223017 [+], 1029377807588pentapeptide repeat family protein, putative 
17BYI23_C001970222980..223711 [+], 732377807589hypothetical protein 
18BYI23_C001980223720..224115 [+], 396377807590hypothetical protein 
19BYI23_C001990224128..224904 [+], 777377807591hypothetical protein 
20BYI23_C002000224954..225781 [+], 828377807592putative type VI secretion lipoprotein, family  TssJ
21BYI23_C002010225800..227188 [+], 1389377807593hypothetical protein  TssK
22BYI23_C002020227190..227879 [+], 690377807594hypothetical protein  TssL
23BYI23_C002030227876..231694 [+], 3819377807595lipoprotein  TssM
24BYI23_C002040 (impA)231695..233278 [-], 1584377807596protein ImpA  TssA
25BYI23_C002050233317..234051 [-], 735377807597DNA-binding response regulator  VirG
26BYI23_C002060234048..235907 [-], 1860377807598sensor histidine kinase  VirA
27BYI23_C002070236173..237804 [-], 1632377807599ABC-type siderophore export system, fused ATPase and permease components 
28BYI23_C002080237825..238028 [-], 204377807600hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
BTH_II0868 , BTH_II0868, BTH_II0868, BTH_II0868

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1BYI23_C001850206730..207218 [-], 489377807577hcp protein BTH_II0868
2BYI23_C001890210293..210781 [+], 489377807581hcp protein BTH_II0868
3BYI23_B001010(hcp)128445..128921 [-], 477377812346hcp protein BTH_II0868
4BYI23_A0136601538228..1538716 [+], 489377820810hcp protein BTH_II0868

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Proteins        Genes
N/A
N/A