SecReT6
I. Summary
SecReT6 ID517 insolico
StrainBurkholderia sp. YI23
Repliconchromosome III [Browse all T6SS(s) in this replicon]
AccessionNC_016590
Location413695..432901
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BYI23_C003550409192..410451 [+], 1260377807747amidase 
2BYI23_C003560 (mlrC)410448..411929 [+], 1482377807748microcystin LR degradation protein MlrC-like protein 
3BYI23_C003570412001..413023 [+], 1023377807749hypothetical protein 
4BYI23_C003580413108..413611 [+], 504377807750hypothetical protein 
5BYI23_C003590 (impA)413695..414717 [+], 1023377807751protein ImpA  TssA
6BYI23_C003600414755..415279 [+], 525377807752type VI secretion protein  TssB
7BYI23_C003610 (evpB)415290..416807 [+], 1518377807753type VI secretion protein, EvpB  TssC
8BYI23_C003620416858..417349 [+], 492377807754hypothetical protein  TssD
9BYI23_C003630417357..417866 [+], 510377807755type VI secretion system lysozyme like protein  TssE
10BYI23_C003640417863..419725 [+], 1863377807756type VI secretion protein  TssF
11BYI23_C003650419710..420726 [+], 1017377807757type VI secretion protein  TssG
12BYI23_C003660420731..423340 [+], 2610377807758chaperone  TssH
13BYI23_C003670423327..425300 [+], 1974377807759ImpA family type VI secretion-associated protein  TssI
14BYI23_C003680425310..426689 [+], 1380377807760regulatory protein  Fha
15BYI23_C003690426698..428032 [+], 1335377807761type VI secretion protein  TssK
16BYI23_C003700 (dotU)428061..429395 [+], 1335377807762DotU family type IV/VI secretion system protein  TssL
17BYI23_C003710429392..432901 [+], 3510377807763hypothetical protein  TssM
18BYI23_C003720432898..433425 [+], 528377807764hypothetical protein  TagF
19BYI23_C003730433428..434777 [-], 1350377807765serine/threonine protein kinase 
20BYI23_C003740434781..435674 [-], 894377807766sensor protein 
21BYI23_C003750435704..436540 [-], 837377807767hypothetical protein 
22BYI23_C003760436632..437573 [-], 942377807768putative transmembrane anti-sigma factor 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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