SecReT6
I. Summary
SecReT6 ID519 insolico
StrainAzospirillum brasilense Sp245
Repliconplasmid AZOBR_p1 [Browse all T6SS(s) in this replicon]
AccessionNC_016594
Location1541932..1570041
Comment
FunctionN/A
T6SS TypeType i; subtype i4a
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number121101111
ComponentTssGTssJTssKTssM
Number1011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1AZOBR_p11401211538110..1538685 [+], 576392378675RNA polymerase ECF sigma factor (sigma70) 
2AZOBR_p11401221538682..1539335 [+], 654392378676putative transcriptional activator 
3AZOBR_p1140123 (dinB)1539404..1540603 [+], 1200392378677DNA polymerase IV, devoid of proofreading,damage-inducible protein P 
4AZOBR_p11401241540698..1541090 [+], 393392378678conserved exported protein of unknown function 
5AZOBR_p11401251541250..1541930 [-], 681392378679hypothetical protein 
6AZOBR_p11401261541932..1544007 [-], 2076392378680hypothetical protein  TssI
7AZOBR_p1140127 (clpV)1544024..1546639 [-], 2616392378681protein clpV1  TssH
8AZOBR_p11401281546636..1547739 [-], 1104392378682hypothetical protein  TssG
9AZOBR_p11401291547703..1549499 [-], 1797392378683hypothetical protein  TssF
10AZOBR_p11401301549514..1549987 [-], 474392378684hypothetical protein  TssE
11AZOBR_p11401311550152..1550619 [-], 468392378685hypothetical protein  TssD
12AZOBR_p11401321550706..1552175 [-], 1470392378686hypothetical protein  TssC
13AZOBR_p11401331552225..1552761 [-], 537392378687hypothetical protein  TssB
14AZOBR_p11401341552930..1553520 [-], 591392378688hypothetical protein 
15AZOBR_p11401351553490..1553657 [-], 168392378689hypothetical protein 
16AZOBR_p11401361553694..1554008 [-], 315392378690hypothetical protein 
17AZOBR_p11401371554112..1556765 [+], 2654392378691conserved membrane protein of unknown function 
18AZOBR_p11500011556904..1557203 [+], 300392378692membrane protein of unknown function 
19AZOBR_p11500021557200..1558558 [+], 1359392378693exported protein of unknown function 
20AZOBR_p11500031558417..1559226 [+], 810392378694serine phosphatase (fragment) 
21AZOBR_p11500041559223..1559987 [+], 765392378695hypothetical protein 
22AZOBR_p11500051559998..1560513 [+], 516392378696conserved exported protein of unknown function  SPOR
23AZOBR_p11500061560730..1561494 [+], 765392378697conserved exported protein of unknown function  SPOR
24AZOBR_p11500071561500..1561949 [+], 450392378698conserved exported protein of unknown function 
25AZOBR_p11500081561977..1563320 [+], 1344392378699hypothetical protein  TssK
26AZOBR_p11500091563329..1564213 [+], 885392378700hypothetical protein  TssL
27AZOBR_p11500101564229..1564687 [+], 459392378701hypothetical protein 
28AZOBR_p11500111564684..1569480 [+], 4797392378702hypothetical protein  TssM
29AZOBR_p11500121569484..1570041 [+], 558392378703hypothetical protein  TssD
30AZOBR_p11500131570038..1570625 [+], 588392378704hypothetical protein 
31AZOBR_p11500141570652..1571605 [+], 954392378705membrane protein of unknown function 
32AZOBR_p11500151571688..1572419 [+], 732392378706putative Periplasmic protein 
33AZOBR_p1150016 (mopA)1572837..1573628 [+], 792392378707molybdenum-pterin-binding protein mopA 
34AZOBR_p1150017 (modA)1573653..1574399 [+], 747392378708molybdenum ABC transporter (substrate-binding protein) 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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