SecReT6
I. Summary
SecReT6 ID52 insolico
StrainPhotorhabdus luminescens subsp. laumondii TTO1
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_005126
Location3805730..3880777
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number010301111
ComponentTssGTssJTssKTssM
Number1113
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1plu32183805730..3806371 [-], 64237527101hypothetical protein 
2plu32193807331..3808020 [+], 69037527102hypothetical protein 
3plu32203808060..3808746 [+], 68737527103hypothetical protein 
4plu32213809059..3809727 [+], 66937527104hypothetical protein 
5plu32223810052..3810480 [-], 42937527105hypothetical protein  TssE
6plu32233810485..3811024 [-], 54037527106hypothetical protein  TssJ
7plu32243811002..3812090 [-], 108937527107hypothetical protein  TssG
8plu32253812054..3813814 [-], 176137527108hypothetical protein  TssF
9plu32263814341..3815324 [-], 98437527109hypothetical protein 
10plu32273815368..3817845 [-], 247837527110hypothetical protein 
11plu32283817833..3818345 [-], 51337527111hypothetical protein 
12plu32293818397..3818909 [-], 51337527112hypothetical protein 
13plu32303818983..3819219 [+], 23737527113hypothetical protein 
14plu32313819697..3823068 [-], 337237527114hypothetical protein  TssM
15plu32323823065..3824144 [-], 108037527115hypothetical protein 
16plu32333824164..3824403 [-], 24037527116hypothetical protein 
17plu32343824416..3824649 [-], 23437527117hypothetical protein 
18plu32353824737..3825843 [-], 110737527118hypothetical protein 
19plu32363825840..3827456 [-], 161737527119hypothetical protein 
20plu32373827457..3829982 [-], 252637527120hypothetical protein  TssI
21plu32383830821..3834171 [-], 335137527121hypothetical protein  TssM
22plu32393834188..3835339 [-], 115237527122hypothetical protein 
23plu32403835336..3835593 [-], 25837527123hypothetical protein  PAAR
24plu32413835590..3838079 [-], 249037527124hypothetical protein 
25plu32423838067..3838579 [-], 51337527125hypothetical protein 
26plu32433838631..3839143 [-], 51337527126hypothetical protein 
27plu32443839195..3839710 [-], 51637527127hypothetical protein 
28plu32453839720..3840502 [-], 78337527128hypothetical protein 
29plu32463840506..3842905 [-], 240037527129hypothetical protein  TssI
30plu32473843641..3847012 [-], 337237527130hypothetical protein  TssM
31plu32483847009..3848127 [-], 111937527131hypothetical protein 
32plu32493848348..3848581 [-], 23437527132hypothetical protein 
33plu32503848669..3849718 [-], 105037527133hypothetical protein 
34plu32513849897..3850988 [-], 109237527134hypothetical protein 
35plu32523850981..3852591 [-], 161137527135hypothetical protein 
36plu32533852594..3855122 [-], 252937527136hypothetical protein  TssI
37plu32543855299..3855790 [-], 49237527137hypothetical protein  TssD
38plu32553855809..3857536 [-], 172837527138hypothetical protein  TagL
39plu32563857912..3858214 [+], 30337527139hypothetical protein 
40plu32573858208..3858543 [+], 33637527140hypothetical protein 
41plu32583858607..3860112 [+], 150637527141hypothetical protein 
42plu32603860551..3861900 [-], 135037527142hypothetical protein  TssK
43plu32613861916..3863442 [-], 152737527143hypothetical protein  TssC
44plu32623863474..3863971 [-], 49837527144hypothetical protein  TssB
45plu32633865127..3880777 [-], 1565137527145hypothetical protein 
46plu32643880897..3881043 [-], 14737527146hypothetical protein 
47plu3266 (ISPlu3O)3882983..3884008 [+], 102637527147IS630 family transposase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1plu32543855299..3855790 [-], 49237527137hypothetical protein EC042_4529

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Proteins        Genes
N/A
Regulatory element identified
LuxS
RegulatorDescriptionReference
LuxS (plu1253)Indirect repressorPMID: 20511495

(1) Bernard CS et al. (2010). Nooks and crannies in type VI secretion regulation. J Bacteriol. 192(15):3850-60. [PudMed:20511495]
(2) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
 
in_silico This literature contains bioinformatics investigation