SecReT6
I. Summary
SecReT6 ID521 insolico
StrainKlebsiella oxytoca KCTC 1686
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_016612
Location2590439..2604652
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number000100001
ComponentTssGTssJTssKTssM
Number1101
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1KOX_119802586144..2586344 [-], 201375259191hypothetical protein 
2KOX_119852586679..2587572 [-], 894375259192FAD-dependent pyridine nucleotide-disulfide oxidoreductase 
3KOX_119902587605..2588351 [+], 747375259193TetR family transcriptional regulator 
4KOX_119952588919..2589881 [+], 963375259194putative tetrahydrodipicolinate N-succinyltransferase 
5KOX_120002590439..2591467 [-], 1029375259195type VI secretion protein  TssG
6KOX_120052591467..2593254 [-], 1788375259196type VI secretion protein  TssF
7KOX_120102593325..2593786 [-], 462375259197type VI secretion lipoprotein  TssJ
8KOX_120152593770..2597096 [-], 3327375259198ImcF domain-containing protein  TssM
9KOX_120202597089..2598498 [-], 1410375259199hypothetical protein 
10KOX_120252598498..2598755 [-], 258375259200hypothetical protein  PAAR
11KOX_120302598755..2599216 [-], 462375259201hypothetical protein 
12KOX_120352599282..2600040 [-], 759375259202hypothetical protein 
13KOX_120402600055..2602142 [-], 2088375259203hypothetical protein 
14KOX_120452602139..2604652 [-], 2514375259204Rhs element Vgr protein  TssI
15KOX_120502604943..2605035 [-], 93375259205hypothetical protein 
16KOX_12055 (proA)2605378..2606631 [-], 1254375259206gamma-glutamyl phosphate reductase 
17KOX_120602606642..2607745 [-], 1104375259207gamma-glutamyl kinase 
18KOX_120652608036..2609088 [+], 1053375259208outer membrane phosphoporin protein E 
19KOX_120702609150..2609572 [-], 423375259209lipoprotein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
Hcp

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1KOX_092151957872..1958357 [+], 486375258638Hcp family T6SS protein Cts2H Hcp

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Proteins        Genes
N/A
N/A