SecReT6
I. Summary
SecReT6 ID523 insolico
StrainKlebsiella oxytoca KCTC 1686
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_016612
Location4819335..4852335
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number021101101
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1KOX_223804814841..4815911 [-], 1071375261265ABC transporter 
2KOX_223854815904..4817673 [-], 1770375261266putative ABC transport system inner membrane permease 
3KOX_223904817745..4818833 [-], 1089375261267extracellular solute-binding protein 
4KOX_223954819038..4819184 [-], 147375261268hypothetical protein 
5KOX_224004819335..4819805 [-], 471375261269type VI secretion system protein VasD  TssJ
6KOX_224054819858..4820943 [-], 1086375261270type VI secretion system protein ImpH  TssG
7KOX_224104820907..4822661 [-], 1755375261271type VI secretion protein  TssF
8KOX_224154823015..4823242 [-], 228375261272hypothetical protein 
9KOX_224204823310..4823507 [+], 198375261273hypothetical protein 
10KOX_224254823529..4826999 [-], 3471375261274type VI secretion system protein ImpL  TssM
11KOX_224304826996..4828219 [-], 1224375261275hypothetical protein 
12KOX_224354828306..4829124 [-], 819375261276hypothetical protein 
13KOX_224404829158..4829958 [-], 801375261277hypothetical protein 
14KOX_224454829992..4830792 [-], 801375261278hypothetical protein 
15KOX_224504830826..4831626 [-], 801375261279hypothetical protein 
16KOX_224554831660..4832466 [-], 807375261280hypothetical protein 
17KOX_224604832478..4835615 [-], 3138375261281hypothetical protein 
18KOX_224654835663..4836370 [-], 708375261282hypothetical protein 
19KOX_224704836462..4837214 [-], 753375261283hypothetical protein 
20KOX_224754837319..4838140 [-], 822375261284hypothetical protein 
21KOX_224804838164..4838904 [-], 741375261285hypothetical protein 
22KOX_224854839005..4842130 [-], 3126375261286hypothetical protein 
23KOX_224904842155..4843027 [-], 873375261287hypothetical protein 
24KOX_224954843027..4845369 [-], 2343375261288hypothetical protein  TssI
25KOX_225004845366..4845731 [-], 366375261289ClpV 
26KOX_225054846018..4846158 [-], 141375261290hypothetical protein  TssD
27KOX_225104846160..4846510 [-], 351375261291hypothetical protein  TssD
28KOX_225154846515..4848227 [-], 1713375261292OmpA/MotB domain-containing protein  TagL
29KOX_225204848224..4848913 [-], 690375261293putative OmpA-family membrane protein  TssL
30KOX_225254848910..4850250 [-], 1341375261294hypothetical protein  TssK
31KOX_225304850271..4851809 [-], 1539375261295type VI secretion protein EvpB  TssC
32KOX_225354851844..4852335 [-], 492375261296type VI secretion system protein ImpB  TssB
33KOX_225404853195..4854277 [+], 1083375261297putative dehydrogenase 
34KOX_225454854514..4856664 [+], 2151375261298formate dehydrogenase subunit alpha 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1KOX_225104846160..4846510 [-], 351375261291hypothetical protein EC042_4529

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Proteins        Genes
N/A
N/A