SecReT6
I. Summary
SecReT6 ID524 insolico
StrainKlebsiella oxytoca KCTC 1686
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_016612
Location5598602..5622769
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number011111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1KOX_259155593708..5594466 [+], 759375261963putative DEOR-type transcriptional regulator 
2KOX_259205594516..5595523 [-], 1008375261964nucleoid-associated protein NdpA 
3KOX_259255595702..5595929 [+], 228375261965hypothetical protein 
4KOX_259305595949..5597709 [+], 1761375261966putative phopshatase/sulfatase 
5KOX_259355597982..5598176 [-], 195375261967hypothetical protein 
6KOX_259405598157..5598609 [-], 453375261968hypothetical protein  TssE
7KOX_259455598602..5599138 [-], 537375261969hypothetical protein  TssJ
8KOX_259505599119..5600177 [-], 1059375261970hypothetical protein  TssG
9KOX_259555600177..5601940 [-], 1764375261971type VI secretion system protein ImpG  TssF
10KOX_259605601964..5602698 [-], 735375261972hypothetical protein 
11KOX_259655602763..5602957 [-], 195375261973hypothetical protein 
12KOX_259705602947..5603309 [-], 363375261974hypothetical protein  TssA
13KOX_259755603309..5606728 [-], 3420375261975hypothetical protein  TssM
14KOX_259805606715..5607875 [-], 1161375261976hypothetical protein 
15KOX_259855607879..5608145 [-], 267375261977hypothetical protein  PAAR
16KOX_259905608175..5608855 [-], 681375261978hypothetical protein 
17KOX_259955608852..5610756 [-], 1905375261979hypothetical protein 
18KOX_260005610765..5611304 [-], 540375261980hypothetical protein 
19KOX_260055611297..5613912 [-], 2616375261981hypothetical protein  TssI
20KOX_260105613980..5614207 [-], 228375261982hypothetical protein 
21KOX_260155614204..5614845 [-], 642375261983hypothetical protein 
22KOX_260305616455..5616946 [-], 492375261984type VI secretion system effector  TssD
23KOX_260355616951..5618675 [-], 1725375261985hypothetical protein  TagL
24KOX_260405618679..5619317 [-], 639375261986type VI secretion system protein ImpK  TssL
25KOX_260455619329..5620666 [-], 1338375261987hypothetical protein  TssK
26KOX_260505620685..5622235 [-], 1551375261988hypothetical protein  TssC
27KOX_260555622272..5622769 [-], 498375261989type VI secretion protein  TssB
28KOX_260605623751..5624857 [+], 1107375261990hypothetical protein 
29KOX_260655625060..5625551 [+], 492375261991ecotin 
30KOX_260705625596..5627230 [-], 1635375261992malate:quinone oxidoreductase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1KOX_260305616455..5616946 [-], 492375261984type VI secretion system effector EC042_4529

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Proteins        Genes
N/A
N/A