SecReT6
I. Summary
SecReT6 ID525 insolico
StrainAzospirillum lipoferum 4B
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_016622
Location925575..954369
Comment
FunctionN/A
T6SS TypeType i; subtype i5
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111211
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1AZOLI_0994922333..922515 [+], 183374291533hypothetical protein 
2AZOLI_0998923584..925593 [-], 2010374291534putative serine/threonine protein kinase; type VI secretion associated protein 
3AZOLI_0999925575..929216 [-], 3642374291535putative Type VI secretion protein IcmF-like  TssM
4AZOLI_1000929220..930746 [-], 1527374291536hypothetical protein  TssL
5AZOLI_1001930743..931426 [-], 684374291537hypothetical protein  TssJ
6AZOLI_1002931670..932407 [+], 738374291538hypothetical protein 
7AZOLI_1003932430..933971 [-], 1542374291539putative methylase 
8AZOLI_1004934133..935218 [-], 1086374291540hypothetical protein  TssG
9AZOLI_1005935182..937014 [-], 1833374291541hypothetical protein  TssF
10AZOLI_1006937007..937483 [-], 477374291542hypothetical protein  TssE
11AZOLI_1007937662..938459 [-], 798374291543putative avirulence protein (ImpE-like) involved in protein secretion  TagJ
12AZOLI_1008938510..940060 [-], 1551374291544hypothetical protein  TssC
13AZOLI_1009940068..941561 [-], 1494374291545hypothetical protein  TssC
14AZOLI_1010941566..942072 [-], 507374291546hypothetical protein  TssB
15AZOLI_1011942117..943259 [-], 1143374291547hypothetical protein  TssA
16AZOLI_1012943618..943836 [+], 219374291548hypothetical protein 
17AZOLI_1013943854..944237 [+], 384374291549hypothetical protein  PAAR
18AZOLI_1014944242..945309 [+], 1068374291550hypothetical protein 
19AZOLI_1015 (clpB3)945499..948189 [+], 2691374291551ATP-dependent chaperone; type VI secretion associated protein  TssH
20AZOLI_1016948342..948818 [+], 477374291552hypothetical protein  TssD
21AZOLI_1018948964..951084 [+], 2121374291553hypothetical protein  TssI
22AZOLI_1019951131..951718 [+], 588374291554hypothetical protein 
23AZOLI_1020951723..952979 [+], 1257374291555putative SMAD/FHA domain; type VI secretion machinery component  Fha
24AZOLI_1021953035..954369 [+], 1335374291556hypothetical protein  TssK
25AZOLI_1022954400..955158 [+], 759374291557hypothetical protein 
26AZOLI_1023955155..957323 [+], 2169374291558putative permease of the major facilitator superfamily 
27AZOLI_1024957320..958402 [+], 1083374291559putative ABC transporter; periplasmic component 
28AZOLI_1025958399..959223 [+], 825374291560hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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