SecReT6
I. Summary
SecReT6 ID526 insolico
StrainAzospirillum lipoferum 4B
Repliconplasmid AZO_p3 [Browse all T6SS(s) in this replicon]
AccessionNC_016623
Location491600..523269
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number101100000
ComponentTssGTssJTssKTssM
Number0001
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1AZOLI_p30456487168..487611 [-], 444374293927hypothetical protein 
2AZOLI_p30457 (pabC)487629..488435 [-], 8073742939284-amino-4-deoxychorismate lyase 
3AZOLI_p30458 (pabB2)488432..489826 [-], 1395374293929para-aminobenzoate synthase, subunit I 
4AZOLI_p30459 (idnO)489823..490608 [-], 786374293930gluconate 5-dehydrogenase 
5AZOLI_p30460490829..491476 [+], 648374293931hypothetical protein 
6AZOLI_p30461 (clpB2)491600..494284 [-], 2685374293932ATP-dependent chaperone  TssH
7AZOLI_p30462494434..495015 [+], 582374293933hypothetical protein 
8AZOLI_p30464495016..495573 [+], 558374293934hypothetical protein 
9AZOLI_p30465495681..496595 [+], 915374293935putative Transcriptional regulator, LysR family 
10AZOLI_p30466496629..497300 [-], 672374293936putative outer membrane protein, OmpA family  TagL
11AZOLI_p30468497451..497801 [+], 351374293937hypothetical protein 
12AZOLI_p30469497806..498981 [+], 1176374293938putative Phospholipase A(1) 
13AZOLI_p30470499237..499971 [+], 735374293939hypothetical protein 
14AZOLI_p30471500107..502620 [+], 2514374293940putative cation/proton antiporter, Na+/H+ exchanger family 
15AZOLI_p30472502641..503525 [+], 885374293941putative permease of the drug/metabolite transporter (DMT) superfamily 
16AZOLI_p30473503587..504498 [-], 912374293942putative metallo-beta-lactamase 
17AZOLI_p30474504539..505183 [-], 645374293943hypothetical protein 
18AZOLI_p30475505311..506240 [+], 930374293944putative transcriptional regulator, LysR family 
19AZOLI_p30476506362..507999 [+], 1638374293945GMC-type oxidoreductase 
20AZOLI_p30477508105..509040 [-], 936374293946Transposase of ISAli16, IS110 family 
21AZOLI_p30478509366..510985 [-], 1620374293947hypothetical protein 
22AZOLI_p30479511251..512057 [+], 807374293948hypothetical protein 
23AZOLI_p30480512132..515488 [+], 3357374293949hypothetical protein 
24AZOLI_p30482515660..517045 [+], 1386374293950hypothetical protein  TssL
25AZOLI_p30483517110..520619 [+], 3510374293951putative Type VI secretion protein IcmF-like  TssM
26AZOLI_p30484520601..521206 [+], 606374293952hypothetical protein 
27AZOLI_p30485521206..523269 [+], 2064374293953putative type VI secretion protein Vgr-like  TssI
28AZOLI_p30486523266..523913 [+], 648374293954hypothetical protein 
29AZOLI_p30487523938..524228 [+], 291374293955hypothetical protein  PAAR
30AZOLI_p30488524271..525887 [+], 1617374293956putative type VI secretion protein, FHA domain-containing  Fha
31AZOLI_p30489525949..528222 [+], 2274374293957putative serine/threonine kinase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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