SecReT6
I. Summary
SecReT6 ID527 insolico
StrainBurkholderia sp. YI23
Repliconplasmid byi_1p [Browse all T6SS(s) in this replicon]
AccessionNC_016626
Location167574..203655
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number121111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BYI23_D001420163240..164973 [-], 1734377810735hypothetical protein 
2BYI23_D001430165095..166858 [-], 1764377810736putative serine/threonine kinase 
3BYI23_D001440166855..167577 [-], 723377810737hypothetical protein 
4BYI23_D001450 (icmF)167574..171209 [-], 3636377810738type VI secretion protein IcmF  TssM
5BYI23_D001460171206..172549 [-], 1344377810739type IV / vi secretion system protein, dotu family  TssL
6BYI23_D001470172546..173916 [-], 1371377810740type VI secretion protein  TssK
7BYI23_D001480174037..174561 [-], 525377810741hypothetical protein  TssJ
8BYI23_D001490174907..177060 [+], 2154377810742Tetratricopeptide domain-containing protein 
9BYI23_D001500 (shlB)177122..178873 [+], 1752377810743Polypeptide-transport-associated domain-containing protein ShlB 
10BYI23_D001510178915..185820 [+], 6906377810744hypothetical protein 
11BYI23_D001520 (impA)185833..186843 [+], 1011377810745protein ImpA  TssA
12BYI23_D001530 (sciH)186923..187459 [+], 537377810746hypothetical protein  TssB
13BYI23_D001540187498..188985 [+], 1488377810747hypothetical protein  TssC
14BYI23_D001550189013..189798 [-], 786377810748putative phosphoprotein phosphatase 
15BYI23_D001560189818..191185 [-], 1368377810749FHA domain-containing protein  Fha
16BYI23_D001570 (clpV)191216..193864 [-], 2649377810750type VI secretion ATPase, ClpV  TssH
17BYI23_D001580 (sciB)196521..197576 [-], 1056377810751putative cytoplasmic protein, sciB  TssG
18BYI23_D001590 (sciC)197609..199492 [-], 1884377810752putative cytoplasmic protein, sciC  TssF
19BYI23_D001600199504..199992 [-], 489377810753type VI secretion system lysozyme  TssE
20BYI23_D001610200020..200628 [-], 609377810754hypothetical protein  TssD
21BYI23_D001620200771..201253 [+], 483377810755hypothetical protein  TssD
22BYI23_D001630201274..203655 [+], 2382377810756hypothetical protein  TssI
23BYI23_D001640203675..204379 [-], 705377810757hypothetical protein 
24BYI23_D001650204376..205092 [-], 717377810758hypothetical protein 
25BYI23_D001660205125..205847 [-], 723377810759hypothetical protein 
26BYI23_D001670205873..206265 [-], 393377810760hypothetical protein 
27BYI23_D001680206262..207299 [-], 1038377810761hypothetical protein 
28BYI23_D001690207296..208414 [-], 1119377810762hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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