SecReT6
I. Summary
SecReT6 ID528 insolico
StrainBurkholderia sp. YI23
Repliconplasmid byi_1p [Browse all T6SS(s) in this replicon]
AccessionNC_016626
Location404868..429836
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number000300001
ComponentTssGTssJTssKTssM
Number1101
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BYI23_D003350400080..400898 [-], 819377810928nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 
2BYI23_D003360400930..401826 [-], 897377810929glycine betaine ABC transporter substrate-binding protein 
3BYI23_D003370401837..402541 [-], 705377810930binding-protein-dependent transport system inner membrane protein 
4BYI23_D003380402538..403656 [-], 1119377810931glycine betaine/L-proline ABC transporter ATPase 
5BYI23_D003390403660..404385 [-], 726377810932binding-protein-dependent transport system inner membrane protein 
6BYI23_D003400404868..407513 [+], 2646377810933hypothetical protein  TssI
7BYI23_D003410 (flgJ)408681..410426 [+], 1746377810934flagellar rod assembly protein/muramidase FlgJ 
8BYI23_D003420 (imcF)410987..411571 [+], 585377810935ImcF domain-containing protein 
9BYI23_D003430411970..412800 [+], 831377810936hypothetical protein  TssI
10BYI23_D003440413171..413686 [+], 516377810937putative transposase IS4 
11BYI23_D003450413760..415541 [+], 1782377810938hypothetical protein  TssI
12BYI23_D003460415538..417547 [+], 2010377810939hypothetical protein 
13BYI23_D003470417551..418828 [+], 1278377810940Sel1-like repeat protein 
14BYI23_D003480418850..419719 [+], 870377810941hypothetical protein 
15BYI23_D003490420043..421320 [+], 1278377810942Sel1 domain-containing protein repeat-containing protein 
16BYI23_D003500421405..421656 [+], 252377810943PAAR motif-containing protein  PAAR
17BYI23_D003510421623..422876 [+], 1254377810944hypothetical protein 
18BYI23_D003520422898..426428 [+], 3531377810945hypothetical protein  TssM
19BYI23_D003530426428..428260 [+], 1833377810946type VI secretion protein  TssF
20BYI23_D003540428242..429306 [+], 1065377810947type VI secretion protein  TssG
21BYI23_D003550429309..429836 [+], 528377810948hypothetical protein  TssJ
22BYI23_D003560429943..430503 [+], 561377810949hypothetical protein 
23BYI23_D003570431024..431803 [+], 780377810950acetoacetate decarboxylase 
24BYI23_D003580431824..432606 [+], 7833778109513-hydroxybutyrate dehydrogenase 
25BYI23_D003590432623..433891 [+], 1269377810952patatin 
26BYI23_D003600433949..434329 [+], 381377810953glyoxalase/bleomycin resistance protein/dioxygenase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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