SecReT6
I. Summary
SecReT6 ID529 insolico
StrainVibrio furnissii NCTC 11218
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_016628
Location808587..832165
Comment
FunctionN/A
T6SS TypeType i; subtype i5
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number201111211
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1vfu_B00773803889..804182 [-], 294375132899hypothetical protein 
2vfu_B00774804418..805266 [+], 849375132900pirin family protein 
3vfu_B00775805426..806112 [-], 687375132901two-component response regulator 
4vfu_B00777806392..807186 [-], 795375132902sensor signal transduction histidine kinase 
5vfu_B00778807188..807793 [-], 606375132903sensor signal transduction histidine kinase 
6vfu_B00779807787..808590 [-], 804375132904Cyclic nucleotide-binding:Protein kinase 
7vfu_B00780808587..811997 [-], 3411375132905hypothetical protein  TssM
8vfu_B00781812010..813227 [-], 1218375132906hypothetical protein  TssL
9vfu_B00782813232..814521 [-], 1290375132907hypothetical protein  TssK
10vfu_B00783814568..815083 [-], 516375132908lipoprotein  TssJ
11vfu_B00784815080..816069 [-], 990375132909hypothetical protein  Fha
12vfu_B00785816078..816812 [-], 735375132910hypothetical protein 
13vfu_B00786816809..818377 [-], 1569375132911ATP-dependent Clp protease ATP-binding subunit  TssH
14vfu_B00787818432..819343 [-], 912375132912ATP-dependent Clp protease ATP-binding subunit  TssH
15vfu_B00788819393..820418 [-], 1026375132913hypothetical protein  TssG
16vfu_B00789820409..822184 [-], 1776375132914hypothetical protein  TssF
17vfu_B00790822177..822599 [-], 423375132915GPW / gp25 family  TssE
18vfu_B00791822596..824020 [-], 1425375132916hypothetical protein  TssC
19vfu_B00792824049..825527 [-], 1479375132917hypothetical protein  TssC
20vfu_B00793825524..826030 [-], 507375132918hypothetical protein  TssB
21vfu_B00794826054..826578 [-], 525375132919hypothetical protein 
22vfu_B00795826729..828063 [-], 1335375132920hypothetical protein  TssA
23vfu_B00796828096..829175 [-], 1080375132921hypothetical protein 
24vfu_B00797829228..829518 [-], 291375132922PAAR repeat-containing protein  PAAR
25vfu_B00798829518..830099 [-], 582375132923hypothetical protein 
26vfu_B00799830102..832165 [-], 2064375132924hypothetical protein  TssI
27vfu_B00800832205..833212 [-], 1008375132925ABC transporter substrate-binding protein 
28vfu_B00801833209..835320 [-], 2112375132926major facilitator superfamily protein 
29vfu_B00802835317..836123 [-], 807375132927hypothetical protein 
30vfu_B00803836508..836789 [-], 282375132928hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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