SecReT6
I. Summary
SecReT6 ID53 insolico
StrainPhotorhabdus luminescens subsp. laumondii TTO1
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_005126
Location4906404..4954812
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111120111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1plu41884901504..4903051 [-], 154837528026hypothetical protein 
2plu41894903075..4903323 [-], 24937528027hypothetical protein 
3plu41904903358..4904473 [-], 111637528028hypothetical protein 
4plu41914904466..4905752 [-], 128737528029hypothetical protein 
5plu41924906404..4907219 [-], 81637528030hypothetical protein 
6plu41934907212..4907925 [-], 71437528031hypothetical protein 
7plu41944907928..4908704 [-], 77737528032hypothetical protein 
8plu41954909679..4909996 [-], 31837528033hypothetical protein 
9plu41964910087..4910500 [-], 41437528034hypothetical protein 
10plu41974911020..4911514 [-], 49537528035hypothetical protein 
11plu41984911700..4913079 [-], 138037528036hypothetical protein  TssA
12plu41994913131..4913565 [-], 43537528037hypothetical protein  TssE
13plu42004913569..4914105 [-], 53737528038hypothetical protein  TssJ
14plu42014914086..4915126 [-], 104137528039hypothetical protein  TssG
15plu42024915126..4916892 [-], 176737528040hypothetical protein  TssF
16plu42034916971..4918569 [-], 159937528041hypothetical protein  TssA
17plu42044918572..4918697 [-], 12637528042hypothetical protein 
18plu42054918735..4919478 [-], 74437528043hypothetical protein 
19plu42064919689..4920690 [-], 100237528044hypothetical protein 
20plu4208 (ISPlu9B)4921260..4922642 [+], 138337528045IS4 family transposase 
21plu42104923248..4925854 [-], 260737528046hypothetical protein 
22plu42114925955..4926446 [-], 49237528047hypothetical protein  TssD
23plu42124926419..4926589 [-], 17137528048hypothetical protein 
24plu42134926590..4926778 [-], 18937528049hypothetical protein 
25plu42144927191..4930550 [-], 336037528050hypothetical protein  TssM
26plu42154930543..4931718 [-], 117637528051hypothetical protein 
27plu42164931721..4931996 [-], 27637528052hypothetical protein  PAAR
28plu42174932024..4932692 [-], 66937528053hypothetical protein 
29plu42184932878..4933867 [-], 99037528054hypothetical protein 
30plu42194933945..4934955 [-], 101137528055hypothetical protein 
31plu42204934952..4937552 [-], 260137528056hypothetical protein 
32plu42214937552..4938592 [-], 104137528057hypothetical protein 
33plu42224938603..4940981 [-], 237937528058hypothetical protein  TssI
34plu42234940978..4943659 [-], 268237528059hypothetical protein  TssH
35plu42244943908..4945584 [-], 167737528060hypothetical protein  TagL
36plu42254945601..4946245 [-], 64537528061hypothetical protein  TssL
37plu42264946288..4947649 [-], 136237528062hypothetical protein  TssK
38plu42274947666..4949198 [-], 153337528063hypothetical protein  TssC
39plu42284950105..4950545 [-], 44137528064hypothetical protein 
40plu42294950825..4952036 [-], 121237528065hypothetical protein 
41plu42304952453..4953391 [+], 93937528066hypothetical protein 
42plu42314953811..4954812 [+], 100237528067hypothetical protein 
43plu42324955352..4956800 [+], 144937528068hypothetical protein 
44plu42334956862..4957422 [-], 56137528069hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1plu42114925955..4926446 [-], 49237528047hypothetical protein EC042_4529

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Proteins        Genes
N/A
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
 
in_silico This literature contains bioinformatics investigation