SecReT6
I. Summary
SecReT6 ID531 insolico
StrainDesulfovibrio africanus str. Walvis Bay
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_016629
Location2476499..2519974
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number211101111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Desaf_22292471586..2472191 [+], 606374300576hypothetical protein 
2Desaf_22302472194..2472550 [+], 357374300577hypothetical protein 
3Desaf_22312472664..2473341 [-], 678374300578hypothetical protein 
4Desaf_22322473427..2474269 [+], 843374300579hypothetical protein 
5Desaf_22332474273..2474983 [+], 711374300580endonuclease/exonuclease/phosphatase 
6Desaf_22342475177..2475398 [+], 222374300581hypothetical protein 
7Desaf_22352476499..2477035 [+], 537374300582type VI secretion lipoprotein  TssJ
8Desaf_22362477035..2478423 [+], 1389374300583type VI secretion protein  TssK
9Desaf_22372478427..2479095 [+], 669374300584DotU family type IV / VI secretion system protein  TssL
10Desaf_22382479097..2482579 [+], 3483374300585hypothetical protein  TssM
11Desaf_22402485130..2485612 [+], 483374300586type VI secretion protein  TssB
12Desaf_22412485624..2487111 [+], 1488374300587type VI secretion protein EvpB  TssC
13Desaf_22422487163..2487645 [+], 483374300588type VI secretion system effector  TssD
14Desaf_22432487751..2488167 [+], 417374300589type VI secretion system lysozyme-like protein  TssE
15Desaf_22442488181..2489914 [+], 1734374300590type VI secretion protein  TssF
16Desaf_22452489878..2490945 [+], 1068374300591type VI secretion protein  TssG
17Desaf_22462490942..2493566 [+], 2625374300592type VI secretion ATPase, ClpV1 family  TssH
18Desaf_22472493575..2494351 [+], 777374300593hypothetical protein 
19Desaf_22482494399..2496678 [+], 2280374300594Rhs element Vgr protein  TssI
20Desaf_22492496687..2500433 [+], 3747374300595hypothetical protein 
21Desaf_22502500430..2501497 [+], 1068374300596pentapeptide repeat-containing protein 
22Desaf_22512501518..2502144 [+], 627374300597hypothetical protein 
23Desaf_22522502155..2502559 [+], 405374300598hypothetical protein 
24Desaf_22532503008..2503721 [-], 714374300599Smr protein/MutS2 
25Desaf_22542503881..2505308 [+], 1428374300600hypothetical protein 
26Desaf_22552505710..2506699 [+], 990374300601heat shock protein DnaJ domain-containing protein 
27Desaf_22562506718..2507032 [+], 315374300602hypothetical protein 
28Desaf_22572507127..2509793 [+], 2667374300603ATP-dependent chaperone ClpB  TssH
29Desaf_22582510256..2510837 [+], 582374300604NADPH-dependent FMN reductase 
30Desaf_22592511114..2511407 [+], 294374300605hypothetical protein 
31Desaf_22602511452..2513212 [-], 1761374300606hypothetical protein 
32Desaf_22612513303..2515642 [+], 2340374300607cysteine synthase 
33Desaf_22622515632..2515931 [-], 300374300608cold-shock protein 
34Desaf_22632515928..2516146 [-], 219374300609translation initiation factor IF-1 
35Desaf_22642516295..2516678 [-], 384374300610hypothetical protein 
36Desaf_22652516815..2517393 [-], 579374300611hypothetical protein 
37Desaf_22662517532..2518356 [-], 825374300612purine nucleoside phosphorylase I 
38Desaf_22672518480..2519235 [+], 756374300613MotA/TolQ/ExbB proton channel 
39Desaf_22682519225..2519974 [+], 750374300614OmpA/MotB domain-containing protein  TagL
40Desaf_22692519991..2520389 [+], 399374300615type IV pilus assembly PilZ 
41Desaf_22702520836..2522251 [+], 1416374300616pyruvate carboxylase 
42Desaf_22712522364..2524616 [+], 2253374300617Acetyl-CoA carboxylase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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