SecReT6
I. Summary
SecReT6 ID532 insolico
StrainGranulicella mallensis MP5ACTX8
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_016631
Location3536093..3558760
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1021
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1AciX8_28653531721..3534792 [-], 3072374311768serine/threonine protein kinase 
2AciX8_28663535190..3535534 [-], 345374311769PAAR repeat-containing protein  PAAR
3AciX8_28673535546..3536028 [-], 483374311770hypothetical protein 
4AciX8_28683536093..3538126 [-], 2034374311771ImpA family type VI secretion-associated protein  TssI
5AciX8_28693538203..3540905 [-], 2703374311772type VI secretion ATPase, ClpV1 family  TssH
6AciX8_28703540950..3542023 [-], 1074374311773type VI secretion protein  TssG
7AciX8_28713541987..3543831 [-], 1845374311774type VI secretion protein  TssF
8AciX8_28723543836..3544297 [-], 462374311775type VI secretion system lysozyme-like protein  TssE
9AciX8_28733544312..3546210 [-], 1899374311776type VI secretion-associated protein, ImpA family  TssA
10AciX8_28743546210..3546941 [-], 732374311777virulence protein SciE type  TagJ
11AciX8_28753546955..3547446 [-], 492374311778hypothetical protein  TssD
12AciX8_28763547508..3549010 [-], 1503374311779type VI secretion protein EvpB  TssC
13AciX8_28773549007..3549522 [-], 516374311780type VI secretion protein  TssB
14AciX8_28783549820..3549942 [-], 123374311781hypothetical protein 
15AciX8_28793550020..3551369 [+], 1350374311782type VI secretion protein  TssK
16AciX8_28803551404..3552681 [-], 1278374311783hypothetical protein 
17AciX8_28813552987..3554360 [+], 1374374311784type VI secretion protein  TssK
18AciX8_28823554706..3555497 [+], 792374311785DotU family type IV / VI secretion system protein  TssL
19AciX8_28833555500..3558760 [+], 3261374311786ImcF domain-containing protein  TssM
20AciX8_28843558777..3559529 [-], 753374311787protein serine/threonine phosphatase 
21AciX8_28853560053..3561075 [-], 10233743117886-phosphogluconate dehydrogenase 
22AciX8_28863561370..3562464 [+], 1095374311789cytochrome c oxidase subunit II 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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