SecReT6
I. Summary
SecReT6 ID533 insolico
StrainPseudovibrio sp. FO-BEG1
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_016642
Location1955327..1973032
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number101011111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PSE_18491951029..1951295 [+], 267374330197hypothetical protein 
2PSE_18501951410..1951913 [-], 504374330198hypothetical protein 
3PSE_18511952398..1952826 [-], 429374330199transcriptional regulator, AsnC family 
4PSE_18521952973..1954115 [+], 1143374330200amidohydrolase family protein 
5PSE_1853 (ygeX)1954129..1955298 [+], 1170374330201Diaminopropionate ammonia-lyase 
6PSE_1854 (impA)1955327..1956751 [-], 1425374330202ImpA domain-containing protein  TssA
7PSE_1855 (icmF)1956757..1960158 [-], 3402374330203Type VI secretion protein IcmF  TssM
8PSE_18561960615..1961124 [+], 510374330204hypothetical protein  TssB
9PSE_1857 (evpB)1961221..1962714 [+], 1494374330205type VI secretion protein EvpB  TssC
10PSE_18581962784..1963182 [+], 399374330206Type VI secretion system, lysozyme-related protein  TssE
11PSE_18591963201..1964988 [+], 1788374330207Type VI secretion system  TssF
12PSE_18601964997..1965986 [+], 990374330208hypothetical protein  TssG
13PSE_1861 (fha)1965995..1967494 [+], 1500374330209FHA domain-containing protein  Fha
14PSE_18621967560..1968120 [+], 561374330210hypothetical protein  TssJ
15PSE_18631968228..1969499 [+], 1272374330211hypothetical protein  TssK
16PSE_1864 (dotU)1969496..1970317 [+], 822374330212Type IV / VI secretion system DotU  TssL
17PSE_1865 (clpV1)1970333..1973032 [+], 2700374330213ATPase, type VI secretion system ClpV1  TssH
18PSE_18661973073..1974608 [+], 1536374330214Nif-specific regulatory protein 
19PSE_18671974674..1975468 [+], 795374330215hypothetical protein 
20PSE_18681975498..1976397 [+], 900374330216pentapeptide repeat-containing protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






N/A
N/A
(1) Bondarev V et al. (2013). The genus Pseudovibrio contains metabolically versatile bacteria adapted for symbiosis. Environ Microbiol. 15(7):2095-113. [PudMed:23601235] in_silico
 
in_silico This literature contains bioinformatics investigation