SecReT6
I. Summary
SecReT6 ID536 insolico
StrainPantoea ananatis LMG 5342
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_016816
Location1820000..1860045
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111211111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PANA5342_1719 (amn)1815004..1816458 [-], 1455378766686AMP nucleosidase 
2PANA5342_1720 (yeeO)1816849..1818267 [+], 1419378766687MATE family transport protein 
3PANA5342_17211819377..1819976 [+], 600378766688type VI secretion system-associated hypothetical protein 
4PANA5342_17221820000..1820503 [+], 504378766689type VI secretion system, core protein  TssJ
5PANA5342_17231820525..1821865 [+], 1341378766690type VI secretion system, core protein  TssK
6PANA5342_17241821882..1823123 [+], 1242378766691type IV/VI secretion system protein, DotU family  TssL
7PANA5342_1725 (icmF1)1823127..1826753 [+], 3627378766692type VI secretion protein IcmF  TssM
8PANA5342_17261826768..1827481 [+], 714378766693type VI secretion system-associated hypothetical protein 
9PANA5342_1727 (impA)1827492..1828514 [+], 1023378766694type VI secretion-associated protein, ImpA family  TssA
10PANA5342_17281828595..1829125 [+], 531378766695type VI secretion system, core protein  TssB
11PANA5342_17291829125..1830624 [+], 1500378766696type VI secretion system, core protein  TssC
12PANA5342_1730 (hcp5)1831205..1831687 [+], 483378766697type VI secretion system effector  TssD
13PANA5342_17311831757..1832614 [+], 858378766698peptidoglycan-binding domain 1 protein 
14PANA5342_17321833289..1834149 [+], 861378766699hypothetical protein 
15PANA5342_17331834746..1835297 [+], 552378766700hypothetical protein 
16PANA5342_17341835392..1835793 [+], 402378766701type VI secretion system-associated hypothetical protein 
17PANA5342_1735 (fha1)1835927..1837822 [+], 1896378766702FHA domain-containing protein  Fha
18PANA5342_1736 (pppA1)1837819..1838610 [+], 792378766703type VI secretion system, serine/threonine protein phosphatase 
19PANA5342_17371838579..1839634 [+], 1056378766704type VI secretion system-associated hypothetical protein 
20PANA5342_17381839651..1840478 [+], 828378766705type VI secretion system-associated hypothetical protein  TagJ
21PANA5342_17391840468..1841043 [+], 576378766706type VI secretion system lysozyme-like protein  TssE
22PANA5342_17401841046..1842923 [+], 1878378766707type VI secretion system, core protein  TssF
23PANA5342_17411842920..1843969 [+], 1050378766708type VI secretion system, core protein  TssG
24PANA5342_1742 (clpV)1844023..1846632 [+], 2610378766709type VI secretion ATPase, ClpV1 family  TssH
25PANA5342_1743 (ppkA1)1846662..1848125 [+], 1464378766710serine/threonine-protein kinase PpkA 
26PANA5342_1744 (vgrG1)1848137..1850362 [+], 2226378766711ImpA family type VI secretion-associated protein  TssI
27PANA5342_17451852659..1855199 [+], 2541378766712hypothetical protein 
28PANA5342_17461855196..1856266 [+], 1071378766713pentapeptide repeat-containing protein 
29PANA5342_17471856279..1856884 [+], 606378766714hypothetical protein 
30PANA5342_17481856894..1857286 [+], 393378766715hypothetical protein 
31PANA5342_1749 (vgrG3)1857334..1860045 [+], 2712378766716ImpA family type VI secretion-associated protein  TssI
32PANA5342_17501860059..1860619 [+], 561378766717hypothetical protein 
33PANA5342_17511862637..1863383 [+], 747378766718hypothetical protein 
34PANA5342_17521863394..1864242 [+], 849378766719hypothetical protein 
35PANA5342_17531864255..1864695 [+], 441378766720hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
SMA2263 , SMA3456, SMA2263, ECL_01567, ECL_03140

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1PANA5342_1639(hcp1)1736924..1737406 [+], 483378766607type VI secretion system effector SMA2263
2PANA5342_1640(hcp3)1737437..1737919 [+], 483378766608type VI secretion system effector SMA3456
3PANA5342_1730(hcp5)1831205..1831687 [+], 483378766697type VI secretion system effector SMA2263
4PANA5342_1754(rhsD1)1864699..1869153 [+], 4455378766721RHS Repeat family protein ECL_01567
5PANA5342_3230(rhsD7)3373950..3378110 [+], 4161378768189Rhs family protein ECL_03140

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Proteins        Genes
N/A
N/A