SecReT6
I. Summary
SecReT6 ID537 insolico
StrainRahnella aquatilis CIP 78.65 = ATCC 33071
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_016818
Location587250..604691
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number001100001
ComponentTssGTssJTssKTssM
Number1101
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Rahaq2_0565583541..584287 [-], 747383188504GMP synthase 
2Rahaq2_0566584314..585300 [-], 987383188505putative dehydrogenase 
3Rahaq2_0567585333..585839 [-], 507383188506putative metal-dependent hydrolase 
4Rahaq2_0568586010..587161 [+], 115238318850716S RNA G1207 methylase RsmC 
5Rahaq2_0569587250..587789 [-], 540383188508type VI secretion lipoprotein  TssJ
6Rahaq2_0570587776..588858 [-], 1083383188509type VI secretion protein  TssG
7Rahaq2_0571588822..590585 [-], 1764383188510type VI secretion protein  TssF
8Rahaq2_0572590594..593929 [-], 3336383188511hypothetical protein  TssM
9Rahaq2_0573593926..595071 [-], 1146383188512hypothetical protein 
10Rahaq2_0574595077..595346 [-], 270383188513hypothetical protein  PAAR
11Rahaq2_0575595449..596555 [-], 1107383188514hypothetical protein 
12Rahaq2_0576596601..597710 [-], 1110383188515hypothetical protein 
13Rahaq2_0577597723..600488 [-], 2766383188516hypothetical protein 
14Rahaq2_0578600485..601516 [-], 1032383188517hypothetical protein 
15Rahaq2_0579601529..603901 [-], 2373383188518Rhs element Vgr protein  TssI
16Rahaq2_0580604059..604691 [-], 633383188519DotU family type IV / VI secretion system protein  TssL
17Rahaq2_0581605251..607287 [-], 2037383188520NADH:flavin oxidoreductase 
18Rahaq2_0582607683..608549 [+], 867383188521enoyl-CoA hydratase/carnithine racemase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
Hcp , EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Rahaq2_30043230586..3231071 [-], 486383190840type VI secretion system effector Hcp
2Rahaq2_35643773738..3774223 [-], 486383191373type VI secretion system effector EC042_4529

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Proteins        Genes
N/A
N/A