SecReT6
I. Summary
SecReT6 ID545 insolico
StrainRahnella aquatilis CIP 78.65 = ATCC 33071
Repliconplasmid pRahaq201 [Browse all T6SS(s) in this replicon]
AccessionNC_016835
Location205434..220009
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number000100001
ComponentTssGTssJTssKTssM
Number1101
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Rahaq2_4760201037..202098 [+], 1062379704117dipeptide/oligopeptide/nickel ABC transporter permease 
2Rahaq2_4761202095..203000 [+], 906379704118dipeptide/oligopeptide/nickel ABC transporter permease 
3Rahaq2_4762202972..203838 [+], 867379704119dipeptide/oligopeptide/nickel ABC transporter ATPase 
4Rahaq2_4763203848..204633 [+], 786379704120dipeptide/oligopeptide/nickel ABC transporter ATPase 
5Rahaq2_4764205077..205328 [+], 252379704121hypothetical protein 
6Rahaq2_4765205343..205450 [-], 108379704122hypothetical protein 
7Rahaq2_4766205434..206525 [-], 1092379704123type VI secretion protein  TssG
8Rahaq2_4767206489..208264 [-], 1776379704124type VI secretion protein  TssF
9Rahaq2_4768208264..208797 [-], 534379704125type VI secretion lipoprotein  TssJ
10Rahaq2_4769208784..212152 [-], 3369379704126hypothetical protein  TssM
11Rahaq2_4770212145..213557 [-], 1413379704127hypothetical protein 
12Rahaq2_4771213557..213811 [-], 255379704128hypothetical protein  PAAR
13Rahaq2_4772213880..214626 [-], 747379704129hypothetical protein 
14Rahaq2_4773214623..215369 [-], 747379704130hypothetical protein 
15Rahaq2_4774215382..217499 [-], 2118379704131hypothetical protein 
16Rahaq2_4775217499..220009 [-], 2511379704132Rhs element Vgr protein  TssI
17Rahaq2_4777220500..222299 [-], 1800379704133dipeptide/oligopeptide/nickel ABC transporter permease 
18Rahaq2_4778222299..223807 [-], 1509379704134dipeptide ABC transporter substrate-binding protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Rahaq2_4701136918..137409 [+], 492379704060type VI secretion system effector EC042_4529

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Proteins        Genes
N/A
N/A