SecReT6
I. Summary
SecReT6 ID546 insolico
StrainRahnella aquatilis CIP 78.65 = ATCC 33071
Repliconplasmid pRahaq201 [Browse all T6SS(s) in this replicon]
AccessionNC_016835
Location316147..334310
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number121121111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Rahaq2_4857311310..311753 [-], 444379704209putative ester cyclase 
2Rahaq2_4858311872..312786 [+], 915379704210transcriptional regulator 
3Rahaq2_4859312875..313735 [-], 861379704211putative oxidoreductase, aryl-alcohol dehydrogenase like protein 
4Rahaq2_4860313831..314766 [+], 936379704212transcriptional regulator 
5Rahaq2_4862315069..315644 [-], 576379704213hypothetical protein 
6Rahaq2_4863316147..316626 [+], 480379704214type VI secretion protein  TssB
7Rahaq2_4864316623..318104 [+], 1482379704215type VI secretion protein EvpB  TssC
8Rahaq2_4865318129..318623 [+], 495379704216hemolysin-coregulated protein  TssD
9Rahaq2_4866318677..319093 [+], 417379704217hypothetical protein  TssE
10Rahaq2_4867319106..320908 [+], 1803379704218type VI secretion protein  TssF
11Rahaq2_4868320899..321846 [+], 948379704219type VI secretion protein  TssG
12Rahaq2_4869321850..323763 [+], 1914379704220Rhs element Vgr protein  TssI
13Rahaq2_4870323777..324292 [+], 516379704221hypothetical protein 
14Rahaq2_4871324292..324591 [+], 300379704222hypothetical protein  PAAR
15Rahaq2_4872324603..325667 [+], 1065379704223type VI secretion-associated protein, ImpA family  TssA
16Rahaq2_4873325694..326239 [+], 546379704224hypothetical protein  TssJ
17Rahaq2_4874326239..327633 [+], 1395379704225type VI secretion protein  TssK
18Rahaq2_4875327630..328253 [+], 624379704226hypothetical protein  TssL
19Rahaq2_4876328257..331694 [+], 3438379704227hypothetical protein  TssM
20Rahaq2_4877331740..334310 [+], 2571379704228type VI secretion ATPase, ClpV1 family  TssH
21Rahaq2_4878334331..335668 [+], 1338379704229hypothetical protein  TssA
22Rahaq2_4879335739..336494 [+], 756379704230hypothetical protein 
23Rahaq2_4880336657..338531 [+], 1875379704231potassium uptake protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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