SecReT6
I. Summary
SecReT6 ID549 insolico
StrainKlebsiella pneumoniae subsp. pneumoniae HS11286
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_016845
Location3235063..3263672
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number001110011
ComponentTssGTssJTssKTssM
Number1111
Click the above image to have a larger view
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1KPHS_324003231179..3231454 [-], 276378979399hypothetical protein 
2KPHS_324103231727..3232311 [+], 585378979400peptidyl-tRNA hydrolase 
3KPHS_324203232429..3233520 [+], 1092378979401translation-associated GTPase 
4KPHS_324303233604..3233933 [-], 330378979402hypothetical protein 
5KPHS_324403234017..3234931 [-], 915378979403putative periplasmic sugar-binding protein 
6KPHS_324503235063..3236478 [-], 1416378979404hypothetical protein  TssA
7KPHS_324603236498..3236941 [-], 444378979405type VI secretion system lysozyme-like protein  TssE
8KPHS_324703236944..3237432 [-], 489378979406hypothetical protein  TssJ
9KPHS_324803237461..3238477 [-], 1017378979407hypothetical protein  TssG
10KPHS_324903238507..3240270 [-], 1764378979408hypothetical protein  TssF
11KPHS_325003240404..3243814 [-], 3411378979409hypothetical protein  TssM
12KPHS_325103243798..3244955 [-], 1158378979410hypothetical protein 
13KPHS_325203244959..3245225 [-], 267378979411hypothetical protein  PAAR
14KPHS_325303245523..3245765 [-], 243378979412hypothetical protein 
15KPHS_325403245834..3245947 [-], 114378979413hypothetical protein 
16KPHS_325503245967..3246101 [-], 135378979414hypothetical protein 
17KPHS_325603246085..3246312 [-], 228378979415hypothetical protein 
18KPHS_325703246446..3247018 [-], 573378979416sulfatase modifying factor 1 
19KPHS_325803246982..3247335 [-], 354378979417sulfatase modifying factor 1 
20KPHS_326003247511..3247768 [-], 258378979418hypothetical protein 
21KPHS_325903247846..3247968 [-], 123378979419hypothetical protein 
22KPHS_326103248047..3249015 [+], 969378979420transposase InsC for insertion sequence IS903 
23KPHS_326203249137..3249349 [-], 213378979421hypothetical protein 
24KPHS_326303249645..3250538 [-], 894378979422sulfatase modifying factor 1 
25KPHS_326403250560..3250676 [-], 117378979423hypothetical protein 
26KPHS_326503250722..3251615 [-], 894378979424sulfatase modifying factor 1 -like protein 
27KPHS_326603251637..3251948 [-], 312378979425hypothetical protein 
28KPHS_326703251966..3252994 [-], 1029378979426hypothetical protein 
29KPHS_326803253359..3253886 [-], 528378979427hypothetical protein 
30KPHS_326903253952..3254476 [-], 525378979428hypothetical protein 
31KPHS_327003254553..3255149 [-], 597378979429hypothetical protein 
32KPHS_327103255146..3255655 [-], 510378979430hypothetical protein 
33KPHS_327203255656..3257011 [-], 1356378979431hypothetical protein 
34KPHS_327303257035..3259521 [-], 2487378979432hypothetical protein  TssI
35KPHS_327403259672..3259797 [-], 126378979433hypothetical protein 
36KPHS_327503259981..3261678 [-], 1698378979434hypothetical protein  TagL
37KPHS_327603261682..3262335 [-], 654378979435membrane protein  TssL
38KPHS_327703262332..3263672 [-], 1341378979436hypothetical protein  TssK
39KPHS_327803263910..3264071 [-], 162378979437hypothetical protein 
40KPHS_327903264242..3264571 [+], 330378979438hypothetical protein 
41KPHS_328003264686..3265225 [+], 540378979439putative nucleoprotein/polynucleotide-associated enzyme 
42KPHS_328103265251..3266042 [-], 792378979440putative ribosomal large subunit pseudouridine synthase A 
43KPHS_328203266140..3266622 [+], 483378979441cold shock protein E 
44KPHS_328303266732..3267631 [+], 900378979442LysR family transcriptional regulator 
45KPHS_328403267606..3268415 [-], 810378979443molybdate ABC transporter periplasmic substrate-binding protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






N/A
N/A
N/A