SecReT6
I. Summary
SecReT6 ID55 insolico
StrainPseudomonas syringae pv. phaseolicola 1448A
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_005773
Location133108..164447
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111011111
ComponentTssGTssJTssKTssM
Number1112
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PSPPH_0111128275..128730 [+], 45671734560acetyltransferase 
2PSPPH_0112128727..129446 [+], 72071735114hypothetical protein 
3PSPPH_0113130159..131262 [-], 110471736461ISPsy19, transposase 
4PSPPH_0114131400..132371 [+], 97271736075ISPsy2, transposase 
5PSPPH_0115132507..133010 [-], 50471735102lipoprotein 
6PSPPH_0116133108..134130 [-], 102371734711lipoprotein 
7PSPPH_0117134132..136063 [-], 193271733687phospholipase D 
8PSPPH_0118136114..136368 [-], 25571733302hypothetical protein  PAAR
9PSPPH_0119136714..137973 [-], 126071737316ISPsy18, transposase 
10PSPPH_0121138816..139919 [-], 110471733734ImpA-like N-terminal family protein  TssA
11PSPPH_0122140006..140524 [-], 51971737480hypothetical protein  TssD
12PSPPH_0123140680..143172 [-], 249371738017OmpA domain-containing protein  TssM
13PSPPH_0124143169..144092 [-], 92471736066hypothetical protein 
14PSPPH_0125144124..148044 [-], 392171736620ImcF-like family protein  TssM
15PSPPH_0126148075..148788 [-], 71471733907hypothetical protein  TssL
16PSPPH_0127148785..150128 [-], 134471734452hypothetical protein  TssK
17PSPPH_0128150125..150880 [-], 75671733359lipoprotein  TssJ
18PSPPH_0129 (clpB1)150906..153509 [-], 260471736516ATP-dependent Clp protease ATP-binding subunit  TssH
19PSPPH_0130153506..154576 [-], 107171737889ImpH  TssG
20PSPPH_0131154540..156372 [-], 183371735418ImpG  TssF
21PSPPH_0132156372..156854 [-], 48371736251hypothetical protein  TssE
22PSPPH_0133156880..158382 [-], 150371734334hypothetical protein  TssC
23PSPPH_0134158397..158930 [-], 53471734592hypothetical protein  TssB
24PSPPH_0135158999..159883 [-], 88571737051hypothetical protein 
25PSPPH_0136160913..161734 [-], 82271737586hypothetical protein 
26PSPPH_0138163896..164447 [-], 55271733264hypothetical protein 
27PSPPH_0139164567..166903 [-], 233771733934oxidoreductase alpha (molybdopterin) subunit 
28PSPPH_0140 (fdhD)166900..167736 [-], 83771734476formate dehydrogenase accessory protein FdhD 
29PSPPH_0141167840..168721 [-], 88271735314LysR family transcriptional regulator 
30PSPPH_0142168763..169440 [-], 67871733682HAD superfamily hydrolase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
Psyr_4965

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1PSPPH_0122140006..140524 [-], 51971737480hypothetical protein Psyr_4965

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Proteins        Genes
N/A
(1) Barret M et al. (2011). Genomic analysis of the type VI secretion systems in Pseudomonas spp.: novel clusters and putative effectors uncovered. Microbiology. 157(Pt 6):1726-39. [PudMed:21474537] in_silico
(2) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
 
in_silico This literature contains bioinformatics investigation