SecReT6
I. Summary
SecReT6 ID555 insolico
StrainEscherichia coli KO11FL
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_016902
Location970556..1004683
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111231111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1EKO11_0924966968..968221 [+], 1254378711736cell wall hydrolase/autolysin 
2EKO11_0925968567..969115 [-], 549378711737hypothetical protein 
3EKO11_0926969180..970556 [-], 1377378711738ImpA domain-containing protein  TssA
4EKO11_0927970556..970984 [-], 429378711739type VI secretion system lysozyme-like protein  TssE
5EKO11_0928970988..971524 [-], 537378711740type VI secretion lipoprotein  TssJ
6EKO11_0929971505..972584 [-], 1080378711741type VI secretion protein  TssG
7EKO11_0930972548..974308 [-], 1761378711742type VI secretion protein  TssF
8EKO11_0931974868..975290 [-], 423378711743hypothetical protein 
9EKO11_0933976316..976627 [+], 312378711744transposase IS3/IS911 family protein 
10EKO11_0935977968..979326 [-], 1359378711745type VI secretion-associated protein  TssA
11EKO11_0937979871..979978 [-], 108378711746hypothetical protein 
12EKO11_0938980428..981345 [-], 918378711747hypothetical protein  PAAR
13EKO11_0939981351..982988 [-], 1638378711748type VI secretion-associated protein  TssA
14EKO11_0940982954..986343 [-], 3390378711749ImcF domain-containing protein  TssM
15EKO11_0941986343..987557 [-], 1215378711750hypothetical protein 
16EKO11_0942987635..988117 [-], 483378711751hypothetical protein 
17EKO11_0944988810..991317 [-], 2508378711752Rhs element Vgr protein  TssI
18EKO11_0945991642..992178 [-], 537378711753hypothetical protein 
19EKO11_0946992168..993019 [-], 852378711754hypothetical protein 
20EKO11_0947993021..995507 [-], 2487378711755Rhs element Vgr protein  TssI
21EKO11_0948995519..998164 [-], 2646378711756type VI secretion ATPase, ClpV1 family  TssH
22EKO11_0949998355..998846 [-], 492378711757type VI secretion system effector  TssD
23EKO11_0950998904..1000556 [-], 1653378711758OmpA/MotB domain-containing protein  TagL
24EKO11_09511000569..1001234 [-], 666378711759DotU family type IV / VI secretion system protein  TssL
25EKO11_09521001231..1002568 [-], 1338378711760type VI secretion protein  TssK
26EKO11_09531002586..1004124 [-], 1539378711761type VI secretion protein EvpB  TssC
27EKO11_09541004183..1004683 [-], 501378711762type VI secretion protein  TssB
28EKO11_09561006777..1007583 [+], 807378711763UBA/THIF-type NAD/FAD binding protein 
29EKO11_09571007634..1008077 [-], 444378711764cysteine desulfurase, sulfur acceptor subunit CsdE 
30EKO11_09581008077..1009282 [-], 1206378711765class V aminotransferase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1EKO11_0949998355..998846 [-], 492378711757type VI secretion system effector EC042_4529

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Proteins        Genes
N/A
N/A