SecReT6
I. Summary
SecReT6 ID556 insolico
StrainEscherichia coli KO11FL
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_016902
Location3848021..3871504
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number121121211
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1EKO11_36853843499..3843936 [-], 438378714429hypothetical protein 
2EKO11_36863843896..3847945 [-], 4050378714430YD repeat protein  PAAR
3EKO11_36873848021..3850162 [-], 2142378714431ImpA family type VI secretion-associated protein  TssI
4EKO11_36883850372..3850890 [-], 519378714432type VI secretion system effector  TssD
5EKO11_36893851588..3852088 [+], 501378714433type VI secretion protein  TssB
6EKO11_36903852123..3852347 [+], 225378714434hypothetical protein  TssC
7EKO11_36913852398..3853873 [+], 1476378714435type VI secretion protein EvpB  TssC
8EKO11_36923853880..3854293 [+], 414378714436type VI secretion system lysozyme-like protein  TssE
9EKO11_36933854297..3856147 [+], 1851378714437type VI secretion protein  TssF
10EKO11_36943856111..3857193 [+], 1083378714438type VI secretion protein  TssG
11EKO11_36953857218..3858498 [+], 1281378714439putative FHA domain-containing protein  Fha
12EKO11_36963858495..3859019 [+], 525378714440type VI secretion lipoprotein  TssJ
13EKO11_36973859022..3860353 [+], 1332378714441type VI secretion protein  TssK
14EKO11_36983860358..3861119 [+], 762378714442DotU family type IV / VI secretion system protein  TssL
15EKO11_36993861128..3863935 [+], 2808378714443type VI secretion ATPase, ClpV1 family  TssH
16EKO11_37003863932..3864675 [+], 744378714444type VI secretion-associated protein 
17EKO11_37013864680..3866092 [+], 1413378714445type VI secretion-associated protein  TssA
18EKO11_37023866111..3869635 [+], 3525378714446type VI secretion protein IcmF  TssM
19EKO11_37033869646..3870998 [+], 1353378714447ImpA domain-containing protein  TssA
20EKO11_37043871022..3871504 [+], 483378714448type VI secretion system effector  TssD
21EKO11_37053871548..3872462 [+], 915378714449hypothetical protein 
22EKO11_37063872472..3872951 [+], 480378714450hypothetical protein 
23EKO11_37073873088..3873873 [-], 786378714451putative aminopeptidase 
24EKO11_37083874413..3875153 [-], 741378714452DNA polymerase III subunit epsilon 
25EKO11_37093875209..3875676 [+], 468378714453Ribonuclease H 
26EKO11_37103875673..3876395 [-], 723378714454type 11 methyltransferase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ABG57132

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1EKO11_36883850372..3850890 [-], 519378714432type VI secretion system effector ABG57132

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Proteins        Genes
N/A
N/A