SecReT6
I. Summary
SecReT6 ID558 insolico
StrainCorallococcus coralloides DSM 2259
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017030
Location5159000..5187615
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number001001111
ComponentTssGTssJTssKTssM
Number0011
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1COCOR_041375154775..5156490 [+], 1716383456120AMP-dependent synthetase and ligase 
2COCOR_041385156506..5156892 [+], 387383456121hypothetical protein 
3COCOR_041395156885..5157961 [+], 1077383456122hypothetical protein 
4COCOR_041405157967..5158863 [+], 897383456123hypothetical protein 
5COCOR_041415159000..5159644 [+], 645383456124hypothetical protein  TssB
6COCOR_041425159686..5161173 [+], 1488383456125hypothetical protein  TssC
7COCOR_041435161229..5161813 [+], 585383456126hypothetical protein 
8COCOR_041445161900..5163150 [+], 1251383456127hypothetical protein  TssK
9COCOR_041455163156..5163545 [+], 390383456128Gpw/Gp25 family protein  TssE
10COCOR_041465163545..5165239 [+], 1695383456129hypothetical protein 
11COCOR_041475165253..5165879 [+], 627383456130hypothetical protein 
12COCOR_041485165932..5167578 [+], 1647383456131hypothetical protein  TssF
13COCOR_041495167591..5168232 [+], 642383456132hypothetical protein  TssL
14COCOR_041505168229..5168546 [+], 318383456133hypothetical protein 
15COCOR_041515168548..5172369 [+], 3822383456134hypothetical protein  TssM
16COCOR_041525172366..5172878 [+], 513383456135hypothetical protein 
17COCOR_041535172882..5175005 [-], 2124383456136hypothetical protein 
18COCOR_041545175002..5176927 [-], 1926383456137hypothetical protein 
19COCOR_04155 (nfrB1)5176935..5177618 [-], 684383456138general secretion pathway protein E 
20COCOR_041565177779..5178615 [+], 837383456139putative lipoprotein 
21COCOR_04157 (ybiR)5178612..5179859 [-], 1248383456140arsenical pump membrane protein 
22COCOR_04158 (yprA)5180044..5182464 [+], 2421383456141DEAD/DEAH box helicase 
23COCOR_041595182481..5184058 [+], 1578383456142hypothetical protein 
24COCOR_041605184415..5184612 [+], 198383456143hypothetical protein 
25COCOR_041615184662..5185258 [-], 597383456144hypothetical protein 
26COCOR_041625185374..5186018 [-], 645383456145hypothetical protein 
27COCOR_04163 (oprF1)5186293..5187615 [+], 1323383456146OmpA domain-containing protein  TagL
28COCOR_041645187678..5189021 [+], 1344383456147WGR domain-containing protein 
29COCOR_041655189031..5190155 [+], 1125383456148hypothetical protein 
30COCOR_041665190122..5191021 [-], 900383456149radical SAM domain-containing protein 
31COCOR_04167 (hemN1)5191018..5192331 [-], 1314383456150coproporphyrinogen III oxidase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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