SecReT6
I. Summary
SecReT6 ID559 insolico
StrainFrateuria aurantia DSM 6220
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017033
Location1895642..1917358
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number011111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Fraau_17791890684..1891529 [-], 846383317024aldo/keto reductase, diketogulonate reductase 
2Fraau_17801891753..1892208 [-], 456383317025hypothetical protein 
3Fraau_17811892775..1894067 [+], 1293383317026arabinose efflux permease family protein 
4Fraau_17821894288..1895109 [+], 822383317027transcriptional regulator 
5Fraau_17831895642..1896700 [+], 1059383317028type VI secretion-associated protein, ImpA family  TssA
6Fraau_17841896757..1897386 [+], 630383317029type VI secretion protein  TssB
7Fraau_17851897411..1898949 [+], 1539383317030type VI secretion protein EvpB  TssC
8Fraau_17861898974..1899456 [+], 483383317031hemolysin-coregulated protein  TssD
9Fraau_17871899602..1900150 [+], 549383317032type VI secretion system lysozyme-like protein  TssE
10Fraau_17881900150..1902012 [+], 1863383317033type VI secretion protein  TssF
11Fraau_17891902009..1903199 [+], 1191383317034type VI secretion protein  TssG
12Fraau_17901903215..1905731 [+], 2517383317035Rhs element Vgr protein  TssI
13Fraau_17911905759..1908356 [+], 2598383317036hypothetical protein 
14Fraau_17921908353..1909411 [+], 1059383317037putative low-complexity protein 
15Fraau_17931909455..1910114 [+], 660383317038hypothetical protein 
16Fraau_17941910127..1910516 [+], 390383317039hypothetical protein 
17Fraau_17951910530..1911042 [+], 513383317040type VI secretion lipoprotein  TssJ
18Fraau_17961911043..1912419 [+], 1377383317041type VI secretion protein  TssK
19Fraau_17971912478..1913758 [+], 1281383317042type VI secretion system OmpA/MotB family protein  TssL
20Fraau_17981913771..1917358 [+], 3588383317043type VI secretion protein IcmF  TssM
21Fraau_17991917402..1918274 [+], 873383317044hypothetical protein  Fha
22Fraau_18001918284..1918802 [-], 519383317045transcription elongation factor GreB 
23Fraau_18011918799..1919347 [-], 549383317046hypothetical protein 
24Fraau_18021919756..1921198 [+], 1443383317047lytic murein transglycosylase 
25Fraau_18031921398..1922246 [-], 849383317048phosphatidylserine decarboxylase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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