SecReT6
I. Summary
SecReT6 ID561 insolico
StrainRahnella aquatilis HX2
Repliconplasmid PRA1 [Browse all T6SS(s) in this replicon]
AccessionNC_017060
Location121369..158855
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111121111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Q7S_23326117356..118903 [+], 1548384527695methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 
2Q7S_23331118976..120523 [-], 1548384527696methyl-accepting chemotaxis sensory transducer 
3Q7S_23336121369..121863 [+], 495384527697type VI secretion protein  TssB
4Q7S_23341121895..123442 [+], 1548384527698type VI secretion protein EvpB  TssC
5Q7S_23346123494..124807 [+], 1314384527699type VI secretion protein  TssK
6Q7S_23351124804..125478 [+], 675384527700DotU family type IV / VI secretion system protein  TssL
7Q7S_23356125480..127156 [+], 1677384527701OmpA/MotB domain-containing protein  TagL
8Q7S_23361127189..127680 [+], 492384527702type VI secretion system effector  TssD
9Q7S_23366127843..130497 [+], 2655384527703type VI secretion ATPase, ClpV1 family protein  TssH
10Q7S_23371130494..132836 [+], 2343384527704Rhs element Vgr protein  TssI
11Q7S_23376132951..133466 [+], 516384527705hypothetical protein 
12Q7S_23381133483..136971 [+], 3489384527706hypothetical protein 
13Q7S_23386136987..137544 [+], 558384527707hypothetical protein 
14Q7S_23391137560..138009 [+], 450384527708hypothetical protein 
15Q7S_23396138037..138567 [+], 531384527709hypothetical protein 
16Q7S_23401138629..138892 [+], 264384527710hypothetical protein  PAAR
17Q7S_23406138895..140106 [+], 1212384527711hypothetical protein 
18Q7S_23411140103..143519 [+], 3417384527712ImcF domain-containing protein  TssM
19Q7S_23416143619..145388 [+], 1770384527713type VI secretion system protein ImpG  TssF
20Q7S_23421145352..146434 [+], 1083384527714type VI secretion protein  TssG
21Q7S_23426146498..147040 [+], 543384527715type VI secretion lipoprotein  TssJ
22Q7S_23451151037..151876 [+], 840384527716ImpA domain-containing protein 
23Q7S_23456152173..153222 [+], 1050384527717ImpA domain-containing protein 
24Q7S_23461153312..154151 [+], 840384527718hypothetical protein 
25Q7S_23466154352..155956 [+], 1605384527719type VI secretion-associated protein  TssA
26Q7S_23471155976..156407 [+], 432384527720type VI secretion system lysozyme-like protein  TssE
27Q7S_23476156569..157378 [+], 810384527721secreted protein 
28Q7S_23481157461..158855 [+], 1395384527722ImpA domain-containing protein  TssA
29Q7S_23486158905..159375 [+], 471384527723hypothetical protein 
30Q7S_23491159923..161347 [+], 1425384527724cytochrome bd ubiquinol oxidase subunit I 
31Q7S_23496161350..162357 [+], 1008384527725cytochrome d ubiquinol oxidase, subunit II 
32Q7S_23501162369..162533 [+], 165384527726hypothetical protein 
33Q7S_23506162766..163344 [-], 579384527727TetR family transcriptional regulator 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Q7S_23361127189..127680 [+], 492384527702type VI secretion system effector EC042_4529

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Proteins        Genes
N/A
N/A