SecReT6
I. Summary
SecReT6 ID563 insolico
StrainRahnella aquatilis HX2
Repliconplasmid PRA1 [Browse all T6SS(s) in this replicon]
AccessionNC_017060
Location501490..521006
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111121111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Q7S_25101496682..497617 [-], 936384528042glycosyl transferase family protein 
2Q7S_25106497842..498861 [-], 1020384528043glycosyl transferase family protein 
3Q7S_25111499213..500184 [+], 972384528044LysR family transcriptional regulator 
4Q7S_25116500189..500764 [-], 576384528045hypothetical protein 
5Q7S_25121501490..501969 [+], 480384528046type VI secretion protein  TssB
6Q7S_25126501966..503447 [+], 1482384528047type VI secretion protein EvpB  TssC
7Q7S_25131503477..503968 [+], 492384528048hypothetical protein  TssD
8Q7S_25136504021..504437 [+], 417384528049GPW/gp25 family protein  TssE
9Q7S_25141504450..506252 [+], 1803384528050type VI secretion protein  TssF
10Q7S_25146506243..507190 [+], 948384528051type VI secretion protein  TssG
11Q7S_25151507194..509083 [+], 1890384528052ImpA family type VI secretion-associated protein  TssI
12Q7S_25156509097..509612 [+], 516384528053hypothetical protein 
13Q7S_25161509612..509911 [+], 300384528054PAAR repeat-containing protein  PAAR
14Q7S_25166509929..510987 [+], 1059384528055type VI secretion-associated protein, ImpA family  TssA
15Q7S_25171510984..511559 [+], 576384528056type VI secretion lipoprotein  TssJ
16Q7S_25176511559..512953 [+], 1395384528057type VI secretion protein  TssK
17Q7S_25181512953..513576 [+], 624384528058type IV / VI secretion system, DotU  TssL
18Q7S_25186513583..517020 [+], 3438384528059hypothetical protein  TssM
19Q7S_25191517066..519636 [+], 2571384528060type VI secretion ATPase, ClpV1 family protein  TssH
20Q7S_25196519657..521006 [+], 1350384528061hypothetical protein  TssA
21Q7S_25201521045..521758 [+], 714384528062hypothetical protein 
22Q7S_25206 (trkD)521954..523828 [+], 1875384528063potassium transport protein Kup 
23Q7S_25211523880..524638 [-], 759384528064hypothetical protein 
24Q7S_25216524793..525680 [+], 888384528065beta-lactamase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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