SecReT6
I. Summary
SecReT6 ID565 insolico
StrainRubrivivax gelatinosus IL144
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017075
Location2692824..2736903
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111411111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1RGE_255602689014..2690267 [-], 1254383758411major facilitator superfamily protein 
2RGE_255702690594..2691616 [+], 1023383758412AraC family transcriptional regulator 
3RGE_256002692824..2693438 [-], 615383758413hypothetical protein  TssI
4RGE_256102693411..2693677 [-], 267383758414hypothetical protein 
5RGE_256202694162..2695052 [-], 891383758415hypothetical protein 
6RGE_256302695102..2696280 [-], 1179383758416hypothetical protein 
7RGE_256402696682..2697641 [-], 960383758417transposase, IS4 family protein 
8RGE_256502698043..2698204 [-], 162383758418hypothetical protein 
9RGE_256602698870..2699685 [-], 816383758419hypothetical protein 
10RGE_256702699672..2700697 [-], 1026383758420hypothetical protein 
11RGE_256802701053..2704103 [-], 3051383758421hypothetical protein  TssI
12RGE_256902704100..2704423 [-], 324383758422hypothetical protein 
13RGE_25700 (clpV)2704453..2707116 [-], 2664383758423type VI secretion ATPase, ClpV1 family  TssH
14RGE_257102707126..2708196 [-], 1071383758424hypothetical protein  TssG
15RGE_257202708160..2710007 [-], 1848383758425hypothetical protein  TssF
16RGE_257302710004..2710489 [-], 486383758426hypothetical protein  TssE
17RGE_257402710561..2711100 [-], 540383758427hypothetical protein  TssD
18RGE_257502711152..2712630 [-], 1479383758428hypothetical protein  TssC
19RGE_257602712636..2713151 [-], 516383758429hypothetical protein  TssB
20RGE_257702713205..2713777 [-], 573383758430hypothetical protein 
21RGE_257802714171..2714773 [+], 603383758431putative lipoprotein  TssJ
22RGE_257902714794..2716143 [+], 1350383758432hypothetical protein  TssK
23RGE_258002716150..2716947 [+], 798383758433DotU family type IV / VI secretion system protein  TssL
24RGE_258102716979..2719774 [+], 2796383758434hypothetical protein  TssI
25RGE_258202719749..2721143 [+], 1395383758435hypothetical protein 
26RGE_258302721140..2722078 [+], 939383758436hypothetical protein 
27RGE_258402722148..2722387 [+], 240383758437hypothetical protein 
28RGE_258502722384..2723607 [+], 1224383758438hypothetical protein 
29RGE_258602723607..2724653 [+], 1047383758439hypothetical protein  TssA
30RGE_258702724672..2725457 [-], 786383758440OmpA/MotB family outer membrane protein  TagL
31RGE_258802725457..2726446 [-], 990383758441hypothetical protein 
32RGE_25890 (icmF)2726443..2730252 [-], 3810383758442type VI secretion protein IcmF  TssM
33RGE_259002730278..2731633 [-], 1356383758443hypothetical protein 
34RGE_259102731767..2732033 [-], 267383758444hypothetical protein  PAAR
35RGE_259202732065..2732925 [-], 861383758445peptidase M15C family protein 
36RGE_259302733140..2733901 [+], 762383758446hypothetical protein 
37RGE_259402733898..2736903 [+], 3006383758447hypothetical protein  TssI
38RGE_259502736907..2738979 [+], 2073383758448hypothetical protein 
39RGE_259602739280..2740236 [+], 957383758449hypothetical protein 
40RGE_259702740322..2741380 [+], 1059383758450hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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