SecReT6
I. Summary
SecReT6 ID567 insolico
StrainLeptospirillum ferrooxidans C2-3
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017094
Location2335440..2357828
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1LFE_22682331776..2332273 [-], 498383785500hypothetical protein 
2LFE_22692332755..2332955 [+], 201383785501hypothetical protein 
3LFE_22702333363..2334586 [-], 1224383785502transposase 
4LFE_22712334685..2334882 [+], 198383785503hypothetical protein 
5LFE_22722334879..2335010 [+], 132383785504hypothetical protein 
6LFE_22732335440..2335940 [+], 501383785505hypothetical protein  TssB
7LFE_22742335978..2337471 [+], 1494383785506hypothetical protein  TssC
8LFE_22752337511..2337999 [+], 489383785507hypothetical protein  TssD
9LFE_22762338013..2338429 [+], 417383785508GPW/gp25 family protein  TssE
10LFE_22772338520..2340253 [+], 1734383785509hypothetical protein  TssF
11LFE_22782340217..2341251 [+], 1035383785510hypothetical protein  TssG
12LFE_22792341248..2343908 [+], 2661383785511ATPase AAA2 domain protein  TssH
13LFE_22802343914..2345416 [+], 1503383785512Rhs element Vgr protein  TssI
14LFE_22812345496..2346218 [+], 723383785513hypothetical protein 
15LFE_22822346302..2349046 [+], 2745383785514pentapeptide repeat protein 
16LFE_22832349043..2350110 [+], 1068383785515pentapeptide repeat protein 
17LFE_22842350125..2350775 [+], 651383785516hypothetical protein 
18LFE_22852350795..2351190 [+], 396383785517hypothetical protein 
19LFE_22862351222..2351905 [+], 684383785518hypothetical protein  TssJ
20LFE_22872351922..2353301 [+], 1380383785519hypothetical protein  TssK
21LFE_22882353301..2353969 [+], 669383785520hypothetical protein  TssL
22LFE_22892353986..2357828 [+], 3843383785521hypothetical protein  TssM
23LFE_22902357874..2359418 [+], 1545383785522ImpA domain protein  TssA
24LFE_22912359517..2359870 [+], 354383785523hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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