SecReT6
I. Summary
SecReT6 ID568 insolico
StrainYersinia pestis D106004
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017154
Location528346..551960
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPD4_0433 (djlA)524299..525132 [+], 834384121025Dna-J like membrane chaperone protein 
2YPD4_0434 (rluA)525430..526050 [-], 621384121026ribosomal large subunit pseudouridine synthase A 
3YPD4_0435527273..527935 [-], 663384121027hypothetical protein 
4YPD4_0436528346..529359 [+], 1014384121028hypothetical protein  TssA
5YPD4_0437529370..529930 [+], 561384121029hypothetical protein  TssB
6YPD4_0438529930..531441 [+], 1512384121030hypothetical protein  TssC
7YPD4_0439531604..532122 [+], 519384121031hypothetical protein  TssD
8YPD4_0440532196..532639 [+], 444384121032hypothetical protein  TssE
9YPD4_0441532672..534516 [+], 1845384121033hypothetical protein  TssF
10YPD4_0442534509..535492 [+], 984384121034hypothetical protein  TssG
11YPD4_0443535510..538098 [+], 2589384121035Clp ATPase  TssH
12YPD4_0444538202..540550 [+], 2349384121036hypothetical protein  TssI
13YPD4_0445540563..541135 [+], 573384121037hypothetical protein 
14YPD4_0446541160..542782 [+], 1623384121038hypothetical protein 
15YPD4_0447542808..543911 [+], 1104384121039hypothetical protein 
16YPD4_0448543904..544521 [+], 618384121040hypothetical protein 
17YPD4_0449544527..544892 [+], 366384121041hypothetical protein  PAAR
18YPD4_0450544903..545376 [+], 474384121042lipoprotein  TssJ
19YPD4_0451545496..546851 [+], 1356384121043hypothetical protein  TssK
20YPD4_0452546848..548458 [+], 1611384121044hypothetical protein  TssL
21YPD4_0453548523..551960 [+], 3438384121045hypothetical protein  TssM
22YPD4_0454551982..552335 [+], 354384121046hypothetical protein 
23YPD4_0455552591..555497 [-], 2907384121047ATP-dependent helicase HepA 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
YPK_3563 , YPK_3558

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YPD4_0439531604..532122 [+], 519384121031hypothetical protein YPK_3563
2YPD4_0444538202..540550 [+], 2349384121036hypothetical protein YPK_3558

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Proteins        Genes
N/A
N/A