SecReT6
I. Summary
SecReT6 ID573 insolico
StrainYersinia pestis D182038
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017160
Location530535..554133
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number110111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPD8_0434 (djlA)526488..527321 [+], 834384124903Dna-J like membrane chaperone protein 
2YPD8_0435 (rluA)527619..528239 [-], 621384124904ribosomal large subunit pseudouridine synthase A 
3YPD8_0436529462..530205 [-], 744384124905hypothetical protein 
4YPD8_0437530535..531548 [+], 1014384124906hypothetical protein  TssA
5YPD8_0438531559..532119 [+], 561384124907hypothetical protein  TssB
6YPD8_0439532119..533630 [+], 1512384124908hypothetical protein  TssC
7YPD8_0440533793..534311 [+], 519384124909hypothetical protein  TssD
8YPD8_0441534385..534828 [+], 444384124910hypothetical protein  TssE
9YPD8_0442534861..536705 [+], 1845384124911hypothetical protein  TssF
10YPD8_0443536698..537681 [+], 984384124912hypothetical protein  TssG
11YPD8_0444537699..540287 [+], 2589384124913Clp ATPase  TssH
12YPD8_0445540391..542739 [+], 2349384124914hypothetical protein  TssI
13YPD8_0446542752..543324 [+], 573384124915hypothetical protein 
14YPD8_0447543349..544971 [+], 1623384124916hypothetical protein 
15YPD8_0448544997..546100 [+], 1104384124917hypothetical protein 
16YPD8_0449546196..546711 [+], 516384124918hypothetical protein 
17YPD8_0450546717..547082 [+], 366384124919hypothetical protein  PAAR
18YPD8_0451547093..547566 [+], 474384124920lipoprotein  TssJ
19YPD8_0452547668..550631 [+], 2964384124921OmpA domain-containing protein  TssK
20YPD8_0453550696..554133 [+], 3438384124922hypothetical protein  TssM
21YPD8_0454554155..554508 [+], 354384124923hypothetical protein 
22YPD8_0455554764..557670 [-], 2907384124924ATP-dependent helicase HepA 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
YPK_3563 , YPK_3558

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YPD8_0440533793..534311 [+], 519384124909hypothetical protein YPK_3563
2YPD8_0445540391..542739 [+], 2349384124914hypothetical protein YPK_3558

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Proteins        Genes
N/A
N/A