SecReT6
I. Summary
SecReT6 ID576 insolico
StrainYersinia pestis D182038
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017160
Location3244381..3280896
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number112111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPD8_25503239548..3240015 [-], 468384127002hypothetical protein 
2YPD8_2551 (lemA)3240631..3241173 [+], 543384127003hypothetical protein 
3YPD8_25523241178..3243217 [+], 2040384127004hypothetical protein 
4YPD8_25533243593..3243934 [+], 342384127005hypothetical protein 
5YPD8_25543244009..3244356 [-], 348384127006hypothetical protein 
6YPD8_25553244381..3244860 [-], 480384127007hypothetical protein  TssE
7YPD8_25563244973..3245779 [-], 807384127008hypothetical protein  TagJ
8YPD8_25573245799..3246647 [-], 849384127009hypothetical protein 
9YPD8_25583247006..3249468 [-], 2463384127010hypothetical protein  TssI
10YPD8_25593249795..3253586 [-], 3792384127011hypothetical protein  TssM
11YPD8_25603253631..3254467 [-], 837384127012OmpA family protein  TssL
12YPD8_25613254483..3255262 [-], 780384127013insertion sequence IS100, ATP-binding protein 
13YPD8_25623255262..3256284 [-], 1023384127014transposase for insertion sequence IS100 
14YPD8_25633256298..3256903 [-], 606384127015DotU family type IV / VI secretion system protein  TssL
15YPD8_25643256963..3258312 [-], 1350384127016hypothetical protein  TssK
16YPD8_25653258316..3258855 [-], 540384127017type VI secretion lipoprotein, family  TssJ
17YPD8_25663259129..3259614 [-], 486384127018hypothetical protein  TssD
18YPD8_25673259940..3261442 [-], 1503384127019hypothetical protein  TssC
19YPD8_25683261466..3261990 [-], 525384127020hypothetical protein  TssB
20YPD8_25693262095..3262703 [-], 609384127021fimbrial protein 
21YPD8_25703262688..3263845 [-], 1158384127022outer membrane fimbrial usher porin 
22YPD8_25713263903..3265111 [+], 1209384127023transposase 
23YPD8_25723265133..3266512 [-], 1380384127024hypothetical protein 
24YPD8_25733266811..3267572 [-], 762384127025pili chaperone protein 
25YPD8_25743267729..3268274 [-], 546384127026frimbrial protein 
26YPD8_2575 (clpB)3268475..3271030 [-], 2556384127027putative Clp ATPase  TssH
27YPD8_25763271978..3273813 [+], 1836384127028hypothetical protein  TssF
28YPD8_25773273813..3274838 [+], 1026384127029hypothetical protein  TssG
29YPD8_25783274937..3276118 [+], 1182384127030hypothetical protein  TssA
30YPD8_25793276146..3277156 [+], 1011384127031hypothetical protein 
31YPD8_25803277196..3278533 [+], 1338384127032hypothetical protein 
32YPD8_25813278530..3279213 [+], 684384127033hypothetical protein 
33YPD8_25823279214..3280896 [+], 1683384127034hypothetical protein  TagL
34YPD8_25833280980..3281375 [+], 396384127035hypothetical protein 
35YPD8_25843281733..3282335 [-], 603384127036putative luxR-family regulatory protein 
36YPD8_25853283590..3284684 [-], 1095384127037membrane-bound lytic murein transglycosylase B 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ROD_27741

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YPD8_25663259129..3259614 [-], 486384127018hypothetical protein ROD_27741

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Proteins        Genes
N/A
N/A