SecReT6
I. Summary
SecReT6 ID577 insolico
StrainYersinia pestis D182038
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017160
Location4081795..4115454
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111221111
ComponentTssGTssJTssKTssM
Number1112
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPD8_32334081370..4081741 [-], 372384127682hypothetical protein 
2YPD8_3234 (vgrG6)4081795..4083993 [-], 2199384127683putative Rhs accessory genetic element  TssI
3YPD8_32354084354..4084761 [+], 408384127684transcriptional regulator 
4YPD8_32364085384..4085869 [-], 486384127685hypothetical protein 
5YPD8_32374085871..4087241 [-], 1371384127686hypothetical protein 
6YPD8_32384087269..4090133 [-], 2865384127687hypothetical protein  PAAR
7YPD8_32394090126..4090584 [-], 459384127688hypothetical protein 
8YPD8_32404090590..4092992 [-], 2403384127689putative Rhs accessory genetic element  TssI
9YPD8_32414093014..4093547 [-], 534384127690hypothetical protein 
10YPD8_32424093544..4094326 [-], 783384127691hypothetical protein  TssA
11YPD8_32434094451..4096385 [-], 1935384127692hypothetical protein  TssM
12YPD8_32444096529..4097983 [-], 1455384127693hypothetical protein  TssM
13YPD8_32454098015..4099403 [-], 1389384127694hypothetical protein  TssA
14YPD8_32464099409..4100095 [-], 687384127695hypothetical protein 
15YPD8_32474100092..4100889 [-], 798384127696hypothetical protein 
16YPD8_3248 (clpB2)4100886..4103489 [-], 2604384127697Clp ATPase  TssH
17YPD8_32494103500..4104267 [-], 768384127698hypothetical protein  TssL
18YPD8_32504104267..4105613 [-], 1347384127699hypothetical protein  TssK
19YPD8_32514105616..4106161 [-], 546384127700putative lipoprotein  TssJ
20YPD8_32524106161..4107477 [-], 1317384127701hypothetical protein  Fha
21YPD8_32534107603..4108691 [-], 1089384127702hypothetical protein  TssG
22YPD8_32544108655..4109449 [-], 795384127703hypothetical protein  TssF
23YPD8_32554109449..4109964 [+], 516384127704insertion element DNA-binding protein 
24YPD8_32564110018..4110803 [+], 786384127705IS1661 transposase 
25YPD8_32574111919..4112317 [-], 399384127706hypothetical protein  TssE
26YPD8_32584112366..4113847 [-], 1482384127707hypothetical protein  TssC
27YPD8_32594113915..4114412 [-], 498384127708hypothetical protein  TssB
28YPD8_32604114936..4115454 [+], 519384127709hypothetical protein  TssD
29YPD8_32614116355..4117266 [-], 912384127710maltose operon periplasmic protein 
30YPD8_3262 (lamB)4117507..4118778 [-], 1272384127711maltoporin 
31YPD8_3263 (malK)4118849..4119958 [-], 1110384127712maltose/maltodextrin transport ATP-binding protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ABG57132

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YPD8_32604114936..4115454 [+], 519384127709hypothetical protein ABG57132

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Proteins        Genes
N/A
N/A