SecReT6
SecReT6
I. Summary
SecReT6 ID578 insolico
StrainAcinetobacter baumannii 1656-2
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017162
Location1848414..1868857
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111011111
ComponentTssGTssJTssKTssM
Number1012
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1ABK1_17381844294..1845175 [-], 882384131698ABC transporter related system, ATPase component 
2ABK1_17391845175..1846056 [-], 882384131699nitrate/sulfonate/bicarbonate ABC transporter permease 
3ABK1_17401846215..1846616 [-], 402384131700hypothetical protein 
4ABK1_17411847705..1848397 [+], 693384131701hypothetical protein 
5ABK1_17421848414..1848917 [+], 504384131702hypothetical protein  TssB
6ABK1_17431848910..1850391 [+], 1482384131703hypothetical protein  TssC
7ABK1_17441850441..1850944 [+], 504384131704hypothetical protein  TssD
8ABK1_17451851024..1851500 [+], 477384131705hypothetical protein  TssE
9ABK1_17461851517..1853328 [+], 1812384131706hypothetical protein  TssF
10ABK1_17471853337..1854290 [+], 954384131707hypothetical protein  TssG
11ABK1_17481854287..1855699 [+], 1413384131708hypothetical protein 
12ABK1_17491855730..1857871 [+], 2142384131709hypothetical protein  TssM
13ABK1_17501857894..1858823 [+], 930384131710transposase 
14ABK1_17511858925..1860586 [+], 1662384131711hypothetical protein  TssM
15ABK1_17521860624..1861583 [+], 960384131712hypothetical protein 
16ABK1_17531861586..1862353 [+], 768384131713Putative outer membrane lipoprotein  TagL
17ABK1_17541862370..1862633 [+], 264384131714hypothetical protein  PAAR
18ABK1_17551862853..1865534 [+], 2682384131715Putative ClpA/B-type chaperone  TssH
19ABK1_17561865558..1866652 [+], 1095384131716hypothetical protein  TssA
20ABK1_17571866669..1868033 [+], 1365384131717hypothetical protein  TssK
21ABK1_17581868051..1868857 [+], 807384131718hypothetical protein  TssL
22ABK1_17591868870..1869472 [+], 603384131719hypothetical protein 
23ABK1_17601869483..1870433 [+], 951384131720hypothetical protein 
24ABK1_17611870436..1871287 [-], 852384131721Regulatory protein LysR:LysR, substrate-binding protein 
25ABK1_17621871478..1872107 [+], 630384131722ankyrin repeat-containing protein 
26ABK1_17631872123..1872605 [+], 483384131723guaD 
27ABK1_17641872605..1873783 [+], 1179384131724cyanate permease 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
A1S_1296

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1ABK1_17441850441..1850944 [+], 504384131704hypothetical protein A1S_1296

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Proteins        Genes
N/A
N/A