SecReT6
I. Summary
SecReT6 ID580 insolico
StrainYersinia pestis A1122
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017168
Location547540..571154
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
Click the above image to have a larger view
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1A1122_02485544003..546909 [+], 2907384137494ATP-dependent helicase HepA 
2A1122_02490546871..547017 [-], 147384137495hypothetical protein 
3A1122_02495547165..547518 [-], 354384137496hypothetical protein 
4A1122_02500547540..550980 [-], 3441384137497hypothetical protein  TssM
5A1122_02505551042..552652 [-], 1611384137498hypothetical protein  TssL
6A1122_02510552649..554004 [-], 1356384137499hypothetical protein  TssK
7A1122_02515554124..554615 [-], 492384137500putative lipoprotein  TssJ
8A1122_02520554608..554973 [-], 366384137501hypothetical protein  PAAR
9A1122_02525554979..555596 [-], 618384137502hypothetical protein 
10A1122_02530555589..556692 [-], 1104384137503hypothetical protein 
11A1122_02545558878..559030 [+], 153384137504hypothetical protein 
12A1122_02550558950..561298 [-], 2349384137505Rhs element Vgr protein  TssI
13A1122_02555561402..563990 [-], 2589384137506Clp ATPase  TssH
14A1122_02560564008..564991 [-], 984384137507hypothetical protein  TssG
15A1122_02565564984..566828 [-], 1845384137508type VI secretion protein  TssF
16A1122_02570566861..567304 [-], 444384137509hypothetical protein  TssE
17A1122_02575567378..567896 [-], 519384137510hypothetical protein  TssD
18A1122_02580568059..569570 [-], 1512384137511hypothetical protein  TssC
19A1122_02585569570..570130 [-], 561384137512hypothetical protein  TssB
20A1122_02590570141..571154 [-], 1014384137513hypothetical protein  TssA
21A1122_02595571484..572227 [+], 744384137514hypothetical protein 
22A1122_02600573450..574070 [+], 621384137515ribosomal large subunit pseudouridine synthase A 
23A1122_02605 (djlA)574368..575201 [-], 834384137516Dna-J like membrane chaperone protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
YPK_3558 , YPK_3563

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1A1122_02550558950..561298 [-], 2349384137505Rhs element Vgr protein YPK_3558
2A1122_02575567378..567896 [-], 519384137510hypothetical protein YPK_3563

Download FASTA format files
Proteins        Genes
N/A
N/A