SecReT6
I. Summary
SecReT6 ID581 insolico
StrainYersinia pestis A1122
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017168
Location1619087..1652747
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111221112
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1A1122_073051614233..1614595 [+], 363384138434glycosidase 
2A1122_073101614583..1615692 [+], 1110384138435maltose/maltodextrin transporter ATP-binding protein 
3A1122_07315 (lamB)1615763..1617034 [+], 1272384138436maltoporin 
4A1122_073201617275..1618186 [+], 912384138437maltose regulon periplasmic protein 
5A1122_073251618657..1618935 [+], 279384138438hypothetical protein 
6A1122_073301619087..1619605 [-], 519384138439hypothetical protein  TssD
7A1122_073351620129..1620626 [+], 498384138440hypothetical protein  TssB
8A1122_073401620694..1622175 [+], 1482384138441hypothetical protein  TssC
9A1122_073451622182..1622622 [+], 441384138442hypothetical protein  TssE
10A1122_073501622622..1623848 [+], 1227384138443type VI secretion system protein ImpG  TssF
11A1122_073551623738..1624523 [-], 786384138444transposase for insertion sequence IS1661 
12A1122_073601624577..1625092 [-], 516384138445insertion element DNA-binding protein 
13A1122_073651625143..1625886 [+], 744384138446hypothetical protein  TssF
14A1122_073701625850..1626938 [+], 1089384138447hypothetical protein  TssG
15A1122_073751627064..1628380 [+], 1317384138448hypothetical protein  Fha
16A1122_073801628380..1628925 [+], 546384138449putative lipoprotein  TssJ
17A1122_073851628928..1630274 [+], 1347384138450hypothetical protein  TssK
18A1122_073901630274..1631041 [+], 768384138451putative membrane protein Aec26  TssL
19A1122_073951631052..1633655 [+], 2604384138452Clp ATPase  TssH
20A1122_074001633652..1634449 [+], 798384138453hypothetical protein 
21A1122_074051634446..1635132 [+], 687384138454hypothetical protein 
22A1122_074101635138..1636526 [+], 1389384138455hypothetical protein  TssA
23A1122_074151636558..1640091 [+], 3534384138456hypothetical protein  TssM
24A1122_074201640216..1640998 [+], 783384138457hypothetical protein  TssA
25A1122_074251641352..1641528 [+], 177384138458hypothetical protein 
26A1122_074301641550..1643952 [+], 2403384138459putative Rhs accessory genetic element  TssI
27A1122_074351643958..1644416 [+], 459384138460hypothetical protein 
28A1122_074401644409..1647273 [+], 2865384138461hypothetical protein  PAAR
29A1122_074451647301..1648671 [+], 1371384138462hypothetical protein 
30A1122_074501648673..1649158 [+], 486384138463hypothetical protein 
31A1122_074551649208..1649399 [-], 192384138464hypothetical protein 
32A1122_074601649475..1649699 [-], 225384138465hypothetical protein 
33A1122_074651649781..1650188 [-], 408384138466putative transcriptional regulator 
34A1122_074701650351..1650527 [+], 177384138467hypothetical protein 
35A1122_074751650549..1652747 [+], 2199384138468putative Rhs accessory genetic element  TssI
36A1122_074801652750..1653172 [+], 423384138469hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ABG57132

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1A1122_073301619087..1619605 [-], 519384138439hypothetical protein ABG57132

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Proteins        Genes
N/A
N/A